Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2201

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2200 and b3011 are separated by 807 nucleotidesb3011 and DVU2202 are separated by 310 nucleotides DVU2200: DVU2200 - hypothetical protein (TIGR), at 2,294,814 to 2,295,194 DVU2200 DVU2201: b3011 - alcohol dehydrogenase, iron-containing (TIGR), at 2,296,002 to 2,297,159 b3011 DVU2202: DVU2202 - transglycosylase SLT domain/bacterial extracellular solute-binding domain protein (TIGR), at 2,297,470 to 2,298,987 DVU2202 Position (kb) 2296 2297 2298Strain fitness (log2 ratio) -3 -2 -1 0 1at 2295.194 kb on + strandat 2295.279 kb on - strandat 2295.296 kb on - strandat 2295.347 kb on - strandat 2295.347 kb on - strandat 2295.372 kb on - strandat 2295.431 kb on - strandat 2295.487 kb on + strandat 2295.516 kb on - strandat 2295.519 kb on + strandat 2295.580 kb on + strandat 2295.601 kb on + strandat 2295.725 kb on - strandat 2295.727 kb on - strandat 2295.738 kb on - strandat 2295.834 kb on + strandat 2295.885 kb on - strandat 2295.978 kb on + strandat 2296.001 kb on + strandat 2296.023 kb on + strandat 2296.049 kb on + strandat 2296.096 kb on + strandat 2296.120 kb on + strand, within b3011at 2296.138 kb on - strand, within b3011at 2296.219 kb on - strand, within b3011at 2296.220 kb on + strand, within b3011at 2296.237 kb on - strand, within b3011at 2296.290 kb on + strand, within b3011at 2296.395 kb on + strand, within b3011at 2296.397 kb on - strand, within b3011at 2296.532 kb on + strand, within b3011at 2296.542 kb on - strand, within b3011at 2296.582 kb on + strand, within b3011at 2296.587 kb on - strand, within b3011at 2296.610 kb on - strand, within b3011at 2296.617 kb on + strand, within b3011at 2296.652 kb on - strand, within b3011at 2296.689 kb on + strand, within b3011at 2296.689 kb on + strand, within b3011at 2296.718 kb on + strand, within b3011at 2296.733 kb on - strand, within b3011at 2296.836 kb on - strand, within b3011at 2296.907 kb on + strand, within b3011at 2297.033 kb on + strand, within b3011at 2297.036 kb on - strand, within b3011at 2297.049 kb on - strandat 2297.113 kb on + strandat 2297.146 kb on + strandat 2297.170 kb on - strandat 2297.195 kb on + strandat 2297.195 kb on + strandat 2297.203 kb on - strandat 2297.203 kb on - strandat 2297.227 kb on - strandat 2297.227 kb on - strandat 2297.297 kb on + strandat 2297.297 kb on + strandat 2297.297 kb on + strandat 2297.298 kb on - strandat 2297.305 kb on - strandat 2297.327 kb on + strandat 2297.411 kb on + strandat 2297.419 kb on - strandat 2297.431 kb on - strandat 2297.431 kb on - strandat 2297.460 kb on - strandat 2297.493 kb on - strandat 2297.493 kb on - strandat 2297.514 kb on + strandat 2297.522 kb on - strandat 2297.566 kb on + strandat 2297.581 kb on - strandat 2297.636 kb on + strand, within DVU2202at 2297.704 kb on + strand, within DVU2202at 2297.704 kb on + strand, within DVU2202at 2297.714 kb on + strand, within DVU2202at 2297.766 kb on + strand, within DVU2202at 2297.843 kb on + strand, within DVU2202at 2297.851 kb on - strand, within DVU2202at 2297.885 kb on - strand, within DVU2202at 2297.885 kb on - strand, within DVU2202at 2297.885 kb on - strand, within DVU2202at 2297.895 kb on - strand, within DVU2202at 2297.900 kb on - strand, within DVU2202at 2297.915 kb on + strand, within DVU2202at 2297.923 kb on - strand, within DVU2202at 2298.047 kb on + strand, within DVU2202at 2298.055 kb on - strand, within DVU2202at 2298.141 kb on - strand, within DVU2202

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,295,194 + -1.0
2,295,279 - +0.0
2,295,296 - +0.8
2,295,347 - -0.7
2,295,347 - -0.9
2,295,372 - -1.0
2,295,431 - -1.1
2,295,487 + +0.8
2,295,516 - -0.2
2,295,519 + -1.3
2,295,580 + -3.0
2,295,601 + -1.0
2,295,725 - -1.0
2,295,727 - -1.3
2,295,738 - -1.7
2,295,834 + -0.1
2,295,885 - -0.3
2,295,978 + +0.1
2,296,001 + +1.0
2,296,023 + -0.5
2,296,049 + -1.0
2,296,096 + -0.3
2,296,120 + b3011 DVU2201 0.10 +0.8
2,296,138 - b3011 DVU2201 0.12 +0.2
2,296,219 - b3011 DVU2201 0.19 -0.6
2,296,220 + b3011 DVU2201 0.19 +1.1
2,296,237 - b3011 DVU2201 0.20 -0.6
2,296,290 + b3011 DVU2201 0.25 -0.6
2,296,395 + b3011 DVU2201 0.34 -1.5
2,296,397 - b3011 DVU2201 0.34 -0.2
2,296,532 + b3011 DVU2201 0.46 +1.2
2,296,542 - b3011 DVU2201 0.47 -1.5
2,296,582 + b3011 DVU2201 0.50 -1.1
2,296,587 - b3011 DVU2201 0.51 -1.3
2,296,610 - b3011 DVU2201 0.53 -1.2
2,296,617 + b3011 DVU2201 0.53 -1.6
2,296,652 - b3011 DVU2201 0.56 -0.7
2,296,689 + b3011 DVU2201 0.59 -0.4
2,296,689 + b3011 DVU2201 0.59 -0.8
2,296,718 + b3011 DVU2201 0.62 -0.4
2,296,733 - b3011 DVU2201 0.63 -0.2
2,296,836 - b3011 DVU2201 0.72 +1.5
2,296,907 + b3011 DVU2201 0.78 -1.1
2,297,033 + b3011 DVU2201 0.89 -2.5
2,297,036 - b3011 DVU2201 0.89 -0.9
2,297,049 - +0.2
2,297,113 + -2.7
2,297,146 + -0.3
2,297,170 - -0.0
2,297,195 + -0.6
2,297,195 + -0.5
2,297,203 - +0.5
2,297,203 - +0.5
2,297,227 - -0.4
2,297,227 - +1.0
2,297,297 + -0.5
2,297,297 + -0.7
2,297,297 + -1.3
2,297,298 - -0.1
2,297,305 - +1.0
2,297,327 + -0.7
2,297,411 + -0.6
2,297,419 - -0.3
2,297,431 - +0.2
2,297,431 - -0.0
2,297,460 - -0.1
2,297,493 - +0.1
2,297,493 - -1.2
2,297,514 + -1.4
2,297,522 - +1.2
2,297,566 + +0.7
2,297,581 - -0.7
2,297,636 + DVU2202 0.11 -1.5
2,297,704 + DVU2202 0.15 -0.7
2,297,704 + DVU2202 0.15 +1.2
2,297,714 + DVU2202 0.16 +1.6
2,297,766 + DVU2202 0.19 -2.0
2,297,843 + DVU2202 0.25 -1.1
2,297,851 - DVU2202 0.25 -0.2
2,297,885 - DVU2202 0.27 +0.5
2,297,885 - DVU2202 0.27 +0.2
2,297,885 - DVU2202 0.27 -1.1
2,297,895 - DVU2202 0.28 +0.1
2,297,900 - DVU2202 0.28 -0.1
2,297,915 + DVU2202 0.29 -0.8
2,297,923 - DVU2202 0.30 +1.3
2,298,047 + DVU2202 0.38 +0.0
2,298,055 - DVU2202 0.39 +0.2
2,298,141 - DVU2202 0.44 +0.4

Or see this region's nucleotide sequence