Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2168

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2165 and DVU2166 are separated by 22 nucleotidesDVU2166 and DVU2167 are separated by 129 nucleotidesDVU2167 and DVU2168 are separated by 2 nucleotidesDVU2168 and DVU2169 are separated by 10 nucleotidesDVU2169 and DVU2170 are separated by 3 nucleotides DVU2165: DVU2165 - lysozyme, putative (TIGR), at 2,264,316 to 2,264,816 DVU2165 DVU2166: DVU2166 - holin (TIGR), at 2,264,839 to 2,265,237 DVU2166 DVU2167: DVU2167 - hypothetical protein (TIGR), at 2,265,367 to 2,265,576 DVU2167 DVU2168: DVU2168 - major head protein (TIGR), at 2,265,579 to 2,266,604 DVU2168 DVU2169: DVU2169 - conserved hypothetical protein (TIGR), at 2,266,615 to 2,266,983 DVU2169 DVU2170: DVU2170 - minor capsid protein C (TIGR), at 2,266,987 to 2,268,207 DVU2170 Position (kb) 2265 2266 2267Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2264.584 kb on + strand, within DVU2165at 2264.592 kb on - strand, within DVU2165at 2264.640 kb on + strand, within DVU2165at 2264.657 kb on + strand, within DVU2165at 2264.715 kb on - strand, within DVU2165at 2264.780 kb on - strandat 2264.830 kb on - strandat 2264.842 kb on + strandat 2264.857 kb on - strandat 2264.857 kb on - strandat 2264.870 kb on + strandat 2264.870 kb on + strandat 2264.870 kb on + strandat 2264.878 kb on - strandat 2265.001 kb on + strand, within DVU2166at 2265.016 kb on + strand, within DVU2166at 2265.187 kb on + strand, within DVU2166at 2265.195 kb on - strand, within DVU2166at 2265.195 kb on - strand, within DVU2166at 2265.195 kb on - strand, within DVU2166at 2265.195 kb on - strand, within DVU2166at 2265.426 kb on - strand, within DVU2167at 2265.471 kb on + strand, within DVU2167at 2265.571 kb on - strandat 2265.652 kb on + strandat 2265.812 kb on + strand, within DVU2168at 2265.820 kb on - strand, within DVU2168at 2265.975 kb on - strand, within DVU2168at 2266.094 kb on + strand, within DVU2168at 2266.102 kb on - strand, within DVU2168at 2266.102 kb on - strand, within DVU2168at 2266.167 kb on + strand, within DVU2168at 2266.189 kb on - strand, within DVU2168at 2266.232 kb on + strand, within DVU2168at 2266.291 kb on + strand, within DVU2168at 2266.306 kb on + strand, within DVU2168at 2266.306 kb on + strand, within DVU2168at 2266.306 kb on + strand, within DVU2168at 2266.314 kb on - strand, within DVU2168at 2266.314 kb on - strand, within DVU2168at 2266.332 kb on - strand, within DVU2168at 2266.501 kb on + strand, within DVU2168at 2266.509 kb on - strandat 2266.693 kb on + strand, within DVU2169at 2266.728 kb on + strand, within DVU2169at 2266.736 kb on + strand, within DVU2169at 2266.744 kb on - strand, within DVU2169at 2266.855 kb on + strand, within DVU2169at 2266.861 kb on + strand, within DVU2169at 2266.863 kb on - strand, within DVU2169at 2266.863 kb on - strand, within DVU2169at 2266.906 kb on - strand, within DVU2169at 2266.985 kb on + strandat 2266.992 kb on - strandat 2267.003 kb on + strandat 2267.003 kb on + strandat 2267.011 kb on - strandat 2267.011 kb on - strandat 2267.022 kb on + strandat 2267.059 kb on - strandat 2267.073 kb on - strandat 2267.078 kb on + strandat 2267.128 kb on - strand, within DVU2170at 2267.128 kb on - strand, within DVU2170at 2267.128 kb on - strand, within DVU2170at 2267.135 kb on + strand, within DVU2170at 2267.221 kb on - strand, within DVU2170at 2267.221 kb on - strand, within DVU2170at 2267.256 kb on + strand, within DVU2170at 2267.380 kb on - strand, within DVU2170at 2267.503 kb on - strand, within DVU2170at 2267.528 kb on + strand, within DVU2170

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,264,584 + DVU2165 0.53 -1.0
2,264,592 - DVU2165 0.55 -1.0
2,264,640 + DVU2165 0.65 -1.4
2,264,657 + DVU2165 0.68 +1.5
2,264,715 - DVU2165 0.80 -0.0
2,264,780 - +0.2
2,264,830 - +2.0
2,264,842 + -0.8
2,264,857 - -1.6
2,264,857 - -1.4
2,264,870 + -0.1
2,264,870 + +2.8
2,264,870 + +0.4
2,264,878 - -0.8
2,265,001 + DVU2166 0.41 +1.0
2,265,016 + DVU2166 0.44 +1.6
2,265,187 + DVU2166 0.87 -0.5
2,265,195 - DVU2166 0.89 +1.2
2,265,195 - DVU2166 0.89 +2.7
2,265,195 - DVU2166 0.89 +1.4
2,265,195 - DVU2166 0.89 -2.8
2,265,426 - DVU2167 0.28 +0.1
2,265,471 + DVU2167 0.50 -2.0
2,265,571 - +0.1
2,265,652 + +0.3
2,265,812 + DVU2168 0.23 -1.5
2,265,820 - DVU2168 0.23 -0.4
2,265,975 - DVU2168 0.39 -1.0
2,266,094 + DVU2168 0.50 +0.5
2,266,102 - DVU2168 0.51 +3.4
2,266,102 - DVU2168 0.51 -0.1
2,266,167 + DVU2168 0.57 -2.0
2,266,189 - DVU2168 0.59 -0.9
2,266,232 + DVU2168 0.64 -0.6
2,266,291 + DVU2168 0.69 +0.4
2,266,306 + DVU2168 0.71 +2.5
2,266,306 + DVU2168 0.71 +0.1
2,266,306 + DVU2168 0.71 -0.4
2,266,314 - DVU2168 0.72 -0.3
2,266,314 - DVU2168 0.72 -0.5
2,266,332 - DVU2168 0.73 +0.2
2,266,501 + DVU2168 0.90 -1.0
2,266,509 - -0.1
2,266,693 + DVU2169 0.21 -0.6
2,266,728 + DVU2169 0.31 -0.8
2,266,736 + DVU2169 0.33 -0.6
2,266,744 - DVU2169 0.35 -0.5
2,266,855 + DVU2169 0.65 -0.4
2,266,861 + DVU2169 0.67 +0.1
2,266,863 - DVU2169 0.67 -0.7
2,266,863 - DVU2169 0.67 +0.1
2,266,906 - DVU2169 0.79 -1.7
2,266,985 + -0.5
2,266,992 - +0.1
2,267,003 + -1.0
2,267,003 + -1.1
2,267,011 - +1.9
2,267,011 - +0.4
2,267,022 + -0.1
2,267,059 - +0.8
2,267,073 - +0.3
2,267,078 + +0.1
2,267,128 - DVU2170 0.12 -1.0
2,267,128 - DVU2170 0.12 +0.2
2,267,128 - DVU2170 0.12 -0.1
2,267,135 + DVU2170 0.12 -1.5
2,267,221 - DVU2170 0.19 -0.9
2,267,221 - DVU2170 0.19 +0.2
2,267,256 + DVU2170 0.22 -0.6
2,267,380 - DVU2170 0.32 -1.3
2,267,503 - DVU2170 0.42 -0.5
2,267,528 + DVU2170 0.44 -0.8

Or see this region's nucleotide sequence