Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2064

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2063 and fabK are separated by 111 nucleotidesfabK and xerC are separated by 313 nucleotides DVU2063: DVU2063 - conserved hypothetical protein (TIGR), at 2,141,691 to 2,144,645 DVU2063 DVU2064: fabK - oxidoreductase, 2-nitropropane dioxygenase family (TIGR), at 2,144,757 to 2,145,878 fabK DVU2066: xerC - site-specific recombinase, phage integrase family (TIGR), at 2,146,192 to 2,147,616 xerC Position (kb) 2144 2145 2146Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2143.934 kb on + strand, within DVU2063at 2144.006 kb on - strand, within DVU2063at 2144.181 kb on - strand, within DVU2063at 2144.392 kb on + strandat 2144.419 kb on - strandat 2145.960 kb on - strandat 2146.168 kb on - strandat 2146.310 kb on + strandat 2146.310 kb on + strandat 2146.352 kb on + strand, within xerCat 2146.414 kb on - strand, within xerCat 2146.455 kb on - strand, within xerCat 2146.457 kb on + strand, within xerCat 2146.457 kb on + strand, within xerCat 2146.511 kb on - strand, within xerCat 2146.512 kb on - strand, within xerCat 2146.536 kb on + strand, within xerCat 2146.544 kb on - strand, within xerCat 2146.605 kb on + strand, within xerCat 2146.605 kb on + strand, within xerCat 2146.607 kb on + strand, within xerCat 2146.692 kb on - strand, within xerCat 2146.718 kb on + strand, within xerCat 2146.805 kb on - strand, within xerC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,143,934 + DVU2063 0.76 +1.4
2,144,006 - DVU2063 0.78 +1.8
2,144,181 - DVU2063 0.84 +2.8
2,144,392 + +2.8
2,144,419 - +1.4
2,145,960 - -1.4
2,146,168 - -1.1
2,146,310 + -0.7
2,146,310 + -1.1
2,146,352 + xerC DVU2066 0.11 +0.2
2,146,414 - xerC DVU2066 0.16 +1.2
2,146,455 - xerC DVU2066 0.18 +0.0
2,146,457 + xerC DVU2066 0.19 -2.6
2,146,457 + xerC DVU2066 0.19 -0.9
2,146,511 - xerC DVU2066 0.22 +0.9
2,146,512 - xerC DVU2066 0.22 +1.7
2,146,536 + xerC DVU2066 0.24 +1.4
2,146,544 - xerC DVU2066 0.25 +1.4
2,146,605 + xerC DVU2066 0.29 -1.6
2,146,605 + xerC DVU2066 0.29 +2.7
2,146,607 + xerC DVU2066 0.29 -1.1
2,146,692 - xerC DVU2066 0.35 +0.4
2,146,718 + xerC DVU2066 0.37 -0.3
2,146,805 - xerC DVU2066 0.43 +0.6

Or see this region's nucleotide sequence