Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1937 and DVU1938 are separated by 281 nucleotides DVU1938 and DVU1939 are separated by 45 nucleotides DVU1939 and glpA are separated by 8 nucleotides
DVU1937: DVU1937 - phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative (TIGR), at 2,009,605 to 2,010,618
DVU1937
DVU1938: DVU1938 - hypothetical protein (TIGR), at 2,010,900 to 2,011,175
DVU1938
DVU1939: DVU1939 - anaerobic glycerol-3-phosphate dehydrogenase, B subunit, putative (TIGR), at 2,011,221 to 2,012,504
DVU1939
DVU1940: glpA - anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative (TIGR), at 2,012,513 to 2,014,063
glpA
Position (kb)
2011
2012
2013 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2010.247 kb on + strand, within DVU1937 at 2010.271 kb on - strand, within DVU1937 at 2010.273 kb on - strand, within DVU1937 at 2010.310 kb on - strand, within DVU1937 at 2010.317 kb on + strand, within DVU1937 at 2010.332 kb on + strand, within DVU1937 at 2010.332 kb on + strand, within DVU1937 at 2010.332 kb on + strand, within DVU1937 at 2010.340 kb on - strand, within DVU1937 at 2010.340 kb on - strand, within DVU1937 at 2010.340 kb on - strand, within DVU1937 at 2010.552 kb on - strand at 2010.658 kb on - strand at 2010.658 kb on - strand at 2010.693 kb on + strand at 2010.693 kb on + strand at 2011.040 kb on + strand, within DVU1938 at 2011.074 kb on - strand, within DVU1938 at 2011.100 kb on + strand, within DVU1938 at 2011.149 kb on + strand at 2011.166 kb on - strand at 2011.226 kb on - strand at 2011.228 kb on + strand at 2011.228 kb on + strand at 2011.236 kb on - strand at 2011.236 kb on - strand at 2011.405 kb on + strand, within DVU1939 at 2011.443 kb on - strand, within DVU1939 at 2011.445 kb on + strand, within DVU1939 at 2011.445 kb on + strand, within DVU1939 at 2011.451 kb on + strand, within DVU1939 at 2011.535 kb on + strand, within DVU1939 at 2011.565 kb on + strand, within DVU1939 at 2011.600 kb on - strand, within DVU1939 at 2011.674 kb on - strand, within DVU1939 at 2011.674 kb on - strand, within DVU1939 at 2011.987 kb on + strand, within DVU1939 at 2012.150 kb on + strand, within DVU1939 at 2012.189 kb on + strand, within DVU1939 at 2012.189 kb on - strand, within DVU1939 at 2012.191 kb on + strand, within DVU1939 at 2012.225 kb on + strand, within DVU1939 at 2012.265 kb on - strand, within DVU1939 at 2012.523 kb on - strand at 2012.524 kb on - strand at 2012.693 kb on - strand, within glpA at 2012.724 kb on + strand, within glpA at 2012.736 kb on + strand, within glpA at 2012.842 kb on + strand, within glpA at 2012.864 kb on - strand, within glpA at 2012.971 kb on + strand, within glpA at 2013.158 kb on + strand, within glpA at 2013.196 kb on - strand, within glpA at 2013.199 kb on - strand, within glpA at 2013.206 kb on - strand, within glpA at 2013.279 kb on + strand, within glpA at 2013.279 kb on + strand, within glpA at 2013.392 kb on - strand, within glpA at 2013.392 kb on - strand, within glpA at 2013.416 kb on + strand, within glpA at 2013.451 kb on + strand, within glpA
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM remove 2,010,247 + DVU1937 0.63 -1.2 2,010,271 - DVU1937 0.66 -1.3 2,010,273 - DVU1937 0.66 +3.4 2,010,310 - DVU1937 0.70 -0.0 2,010,317 + DVU1937 0.70 +1.4 2,010,332 + DVU1937 0.72 +1.0 2,010,332 + DVU1937 0.72 +1.7 2,010,332 + DVU1937 0.72 +0.2 2,010,340 - DVU1937 0.72 +2.1 2,010,340 - DVU1937 0.72 +0.5 2,010,340 - DVU1937 0.72 -0.3 2,010,552 - +1.6 2,010,658 - +0.5 2,010,658 - -0.8 2,010,693 + +5.1 2,010,693 + -1.4 2,011,040 + DVU1938 0.51 -1.4 2,011,074 - DVU1938 0.63 +0.0 2,011,100 + DVU1938 0.72 +1.2 2,011,149 + -0.8 2,011,166 - -0.0 2,011,226 - -2.5 2,011,228 + -0.5 2,011,228 + +0.1 2,011,236 - -0.9 2,011,236 - -2.7 2,011,405 + DVU1939 0.14 +1.7 2,011,443 - DVU1939 0.17 +1.4 2,011,445 + DVU1939 0.17 +0.4 2,011,445 + DVU1939 0.17 -0.2 2,011,451 + DVU1939 0.18 +3.7 2,011,535 + DVU1939 0.24 +1.4 2,011,565 + DVU1939 0.27 -0.5 2,011,600 - DVU1939 0.30 -0.8 2,011,674 - DVU1939 0.35 +0.9 2,011,674 - DVU1939 0.35 +1.9 2,011,987 + DVU1939 0.60 -0.5 2,012,150 + DVU1939 0.72 +0.7 2,012,189 + DVU1939 0.75 +0.5 2,012,189 - DVU1939 0.75 +4.6 2,012,191 + DVU1939 0.76 +1.1 2,012,225 + DVU1939 0.78 +0.5 2,012,265 - DVU1939 0.81 +0.1 2,012,523 - -1.0 2,012,524 - -1.2 2,012,693 - glpA DVU1940 0.12 +3.0 2,012,724 + glpA DVU1940 0.14 -1.8 2,012,736 + glpA DVU1940 0.14 -3.0 2,012,842 + glpA DVU1940 0.21 -0.7 2,012,864 - glpA DVU1940 0.23 -0.2 2,012,971 + glpA DVU1940 0.30 +0.2 2,013,158 + glpA DVU1940 0.42 +2.7 2,013,196 - glpA DVU1940 0.44 -0.4 2,013,199 - glpA DVU1940 0.44 +0.9 2,013,206 - glpA DVU1940 0.45 -0.2 2,013,279 + glpA DVU1940 0.49 +0.1 2,013,279 + glpA DVU1940 0.49 +1.4 2,013,392 - glpA DVU1940 0.57 +0.3 2,013,392 - glpA DVU1940 0.57 +3.3 2,013,416 + glpA DVU1940 0.58 -0.0 2,013,451 + glpA DVU1940 0.60 -1.4
Or see this region's nucleotide sequence