Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0924

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0922 and DORF8192 are separated by 344 nucleotidesDORF8192 and DVU0923 overlap by 1 nucleotidesDVU0923 and rumA are separated by 55 nucleotidesrumA and DORF31523 are separated by 138 nucleotidesDORF31523 and rfbA are separated by 157 nucleotides DVU0922: DVU0922 - cytochrome c family protein (TIGR), at 1,013,027 to 1,013,584 DVU0922 DORF8192: DORF8192 - SEED: FIG00606834: hypothetical protein, at 1,013,929 to 1,014,066 DORF8192 DVU0923: DVU0923 - endoribonuclease, L-PSP family (TIGR), at 1,014,066 to 1,014,464 DVU0923 DVU0924: rumA - 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR), at 1,014,520 to 1,015,926 rumA DORF31523: DORF31523 - no description, at 1,016,065 to 1,016,211 DORF31523 DVU0925: rfbA - glucose-1-phosphate thymidylyltransferase (TIGR), at 1,016,369 to 1,017,277 rfbA Position (kb) 1014 1015 1016Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1013.540 kb on + strandat 1013.550 kb on + strandat 1013.619 kb on + strandat 1013.679 kb on - strandat 1013.706 kb on - strandat 1013.706 kb on - strandat 1013.724 kb on + strandat 1013.724 kb on + strandat 1013.732 kb on - strandat 1013.764 kb on - strandat 1013.897 kb on - strandat 1013.927 kb on + strandat 1013.946 kb on + strand, within DORF8192at 1013.946 kb on + strand, within DORF8192at 1014.012 kb on - strand, within DORF8192at 1014.086 kb on + strandat 1014.251 kb on + strand, within DVU0923at 1014.259 kb on - strand, within DVU0923at 1014.269 kb on - strand, within DVU0923at 1014.335 kb on + strand, within DVU0923at 1014.627 kb on + strandat 1014.629 kb on + strandat 1014.635 kb on - strandat 1014.635 kb on - strandat 1014.637 kb on - strandat 1014.637 kb on - strandat 1014.637 kb on - strandat 1014.637 kb on - strandat 1014.684 kb on + strand, within rumAat 1014.745 kb on - strand, within rumAat 1014.880 kb on + strand, within rumAat 1014.880 kb on + strand, within rumAat 1014.880 kb on + strand, within rumAat 1014.880 kb on + strand, within rumAat 1014.880 kb on + strand, within rumAat 1014.880 kb on + strand, within rumAat 1014.888 kb on - strand, within rumAat 1014.888 kb on - strand, within rumAat 1014.890 kb on + strand, within rumAat 1014.956 kb on - strand, within rumAat 1014.976 kb on + strand, within rumAat 1014.981 kb on + strand, within rumAat 1014.982 kb on - strand, within rumAat 1015.008 kb on + strand, within rumAat 1015.011 kb on - strand, within rumAat 1015.011 kb on - strand, within rumAat 1015.013 kb on + strand, within rumAat 1015.143 kb on - strand, within rumAat 1015.207 kb on + strand, within rumAat 1015.217 kb on + strand, within rumAat 1015.285 kb on - strand, within rumAat 1015.287 kb on + strand, within rumAat 1015.299 kb on + strand, within rumAat 1015.331 kb on - strand, within rumAat 1015.428 kb on - strand, within rumAat 1015.439 kb on - strand, within rumAat 1015.446 kb on + strand, within rumAat 1015.475 kb on + strand, within rumAat 1015.493 kb on - strand, within rumAat 1015.547 kb on + strand, within rumAat 1015.567 kb on - strand, within rumAat 1015.660 kb on + strand, within rumAat 1015.663 kb on - strand, within rumAat 1015.666 kb on + strand, within rumAat 1015.694 kb on + strand, within rumAat 1015.711 kb on - strand, within rumAat 1015.722 kb on + strand, within rumAat 1015.779 kb on - strand, within rumAat 1015.781 kb on + strand, within rumAat 1015.789 kb on - strandat 1015.789 kb on - strandat 1015.823 kb on - strandat 1016.038 kb on + strandat 1016.205 kb on + strandat 1016.266 kb on + strandat 1016.367 kb on + strandat 1016.367 kb on + strandat 1016.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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1,013,540 + -0.8
1,013,550 + -0.8
1,013,619 + -2.4
1,013,679 - +0.5
1,013,706 - +0.0
1,013,706 - -0.8
1,013,724 + -0.6
1,013,724 + +1.4
1,013,732 - +2.1
1,013,764 - +1.7
1,013,897 - -0.7
1,013,927 + +0.3
1,013,946 + DORF8192 0.12 +3.7
1,013,946 + DORF8192 0.12 -2.4
1,014,012 - DORF8192 0.60 +0.5
1,014,086 + -1.3
1,014,251 + DVU0923 0.46 -3.3
1,014,259 - DVU0923 0.48 -0.7
1,014,269 - DVU0923 0.51 +0.7
1,014,335 + DVU0923 0.67 +2.3
1,014,627 + -2.7
1,014,629 + -2.1
1,014,635 - +0.1
1,014,635 - -0.9
1,014,637 - -0.6
1,014,637 - -0.3
1,014,637 - -2.0
1,014,637 - -1.3
1,014,684 + rumA DVU0924 0.12 -1.6
1,014,745 - rumA DVU0924 0.16 -0.1
1,014,880 + rumA DVU0924 0.26 -3.4
1,014,880 + rumA DVU0924 0.26 -0.4
1,014,880 + rumA DVU0924 0.26 -0.3
1,014,880 + rumA DVU0924 0.26 +0.1
1,014,880 + rumA DVU0924 0.26 +0.3
1,014,880 + rumA DVU0924 0.26 +0.2
1,014,888 - rumA DVU0924 0.26 +0.2
1,014,888 - rumA DVU0924 0.26 -2.4
1,014,890 + rumA DVU0924 0.26 +0.7
1,014,956 - rumA DVU0924 0.31 -0.3
1,014,976 + rumA DVU0924 0.32 -1.1
1,014,981 + rumA DVU0924 0.33 -0.8
1,014,982 - rumA DVU0924 0.33 +1.7
1,015,008 + rumA DVU0924 0.35 +0.0
1,015,011 - rumA DVU0924 0.35 +2.3
1,015,011 - rumA DVU0924 0.35 -1.1
1,015,013 + rumA DVU0924 0.35 -0.8
1,015,143 - rumA DVU0924 0.44 -0.3
1,015,207 + rumA DVU0924 0.49 -0.5
1,015,217 + rumA DVU0924 0.50 -0.2
1,015,285 - rumA DVU0924 0.54 +0.1
1,015,287 + rumA DVU0924 0.55 +0.2
1,015,299 + rumA DVU0924 0.55 -0.1
1,015,331 - rumA DVU0924 0.58 -1.3
1,015,428 - rumA DVU0924 0.65 +0.6
1,015,439 - rumA DVU0924 0.65 -0.7
1,015,446 + rumA DVU0924 0.66 +2.1
1,015,475 + rumA DVU0924 0.68 -0.8
1,015,493 - rumA DVU0924 0.69 -1.8
1,015,547 + rumA DVU0924 0.73 +2.1
1,015,567 - rumA DVU0924 0.74 +2.6
1,015,660 + rumA DVU0924 0.81 -1.3
1,015,663 - rumA DVU0924 0.81 -0.0
1,015,666 + rumA DVU0924 0.81 -0.3
1,015,694 + rumA DVU0924 0.83 +0.2
1,015,711 - rumA DVU0924 0.85 -2.1
1,015,722 + rumA DVU0924 0.85 +2.2
1,015,779 - rumA DVU0924 0.89 +1.4
1,015,781 + rumA DVU0924 0.90 +0.7
1,015,789 - -1.3
1,015,789 - +0.5
1,015,823 - +1.1
1,016,038 + -0.3
1,016,205 + -2.0
1,016,266 + -1.3
1,016,367 + -0.6
1,016,367 + -1.1
1,016,410 - -2.2

Or see this region's nucleotide sequence