Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0754

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0752 and DVU0753 are separated by 97 nucleotidesDVU0753 and DVU0754 overlap by 4 nucleotidesDVU0754 and DVU0755 are separated by 111 nucleotides DVU0752: DVU0752 - amino acid ABC transporter, amino acid-binding protein (TIGR), at 844,606 to 845,433 DVU0752 DVU0753: DVU0753 - amino acid ABC transporter, ATP-binding protein (TIGR), at 845,531 to 846,262 DVU0753 DVU0754: DVU0754 - hypothetical protein (TIGR), at 846,259 to 846,393 DVU0754 DVU0755: DVU0755 - sensor histidine kinase, putative (TIGR), at 846,505 to 847,872 DVU0755 Position (kb) 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 845.350 kb on + strand, within DVU0752at 845.358 kb on - strandat 845.397 kb on - strandat 845.411 kb on - strandat 845.421 kb on + strandat 845.455 kb on + strandat 845.542 kb on + strandat 845.609 kb on - strand, within DVU0753at 845.619 kb on + strand, within DVU0753at 845.632 kb on - strand, within DVU0753at 845.698 kb on - strand, within DVU0753at 845.768 kb on + strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.852 kb on - strand, within DVU0753at 845.902 kb on + strand, within DVU0753at 845.942 kb on - strand, within DVU0753at 845.949 kb on + strand, within DVU0753at 845.969 kb on - strand, within DVU0753at 845.980 kb on - strand, within DVU0753at 845.992 kb on + strand, within DVU0753at 845.998 kb on + strand, within DVU0753at 846.006 kb on - strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.033 kb on - strand, within DVU0753at 846.038 kb on - strand, within DVU0753at 846.060 kb on + strand, within DVU0753at 846.177 kb on - strand, within DVU0753at 846.187 kb on - strand, within DVU0753at 846.276 kb on - strand, within DVU0754at 846.488 kb on + strandat 846.511 kb on - strandat 846.627 kb on - strandat 846.632 kb on - strandat 846.780 kb on - strand, within DVU0755at 846.782 kb on - strand, within DVU0755at 846.860 kb on + strand, within DVU0755at 846.935 kb on - strand, within DVU0755at 847.211 kb on + strand, within DVU0755at 847.359 kb on + strand, within DVU0755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
remove
845,350 + DVU0752 0.90 -1.8
845,358 - -0.9
845,397 - +0.1
845,411 - +0.0
845,421 + -2.0
845,455 + -0.6
845,542 + -0.4
845,609 - DVU0753 0.11 -0.5
845,619 + DVU0753 0.12 -1.4
845,632 - DVU0753 0.14 +0.1
845,698 - DVU0753 0.23 -2.0
845,768 + DVU0753 0.32 -1.3
845,805 - DVU0753 0.37 -0.8
845,805 - DVU0753 0.37 +0.5
845,852 - DVU0753 0.44 -2.1
845,902 + DVU0753 0.51 -1.0
845,942 - DVU0753 0.56 -1.7
845,949 + DVU0753 0.57 -0.5
845,969 - DVU0753 0.60 -1.1
845,980 - DVU0753 0.61 -1.6
845,992 + DVU0753 0.63 -0.7
845,998 + DVU0753 0.64 +3.9
846,006 - DVU0753 0.65 -1.8
846,030 + DVU0753 0.68 +2.7
846,030 + DVU0753 0.68 -1.0
846,033 - DVU0753 0.69 +1.5
846,038 - DVU0753 0.69 -1.0
846,060 + DVU0753 0.72 -2.5
846,177 - DVU0753 0.88 -0.9
846,187 - DVU0753 0.90 +2.7
846,276 - DVU0754 0.13 -0.9
846,488 + -1.3
846,511 - +1.3
846,627 - +1.3
846,632 - +0.6
846,780 - DVU0755 0.20 +0.1
846,782 - DVU0755 0.20 +2.5
846,860 + DVU0755 0.26 -1.5
846,935 - DVU0755 0.31 +0.3
847,211 + DVU0755 0.52 +2.1
847,359 + DVU0755 0.62 -3.1

Or see this region's nucleotide sequence