Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_001722 and ABIE53_001723 are separated by 90 nucleotides ABIE53_001723 and ABIE53_001724 overlap by 4 nucleotides
ABIE53_001722: ABIE53_001722 - MHS family proline/betaine transporter-like MFS transporter, at 1,942,518 to 1,943,864
_001722
ABIE53_001723: ABIE53_001723 - MFS family permease, at 1,943,955 to 1,945,211
_001723
ABIE53_001724: ABIE53_001724 - hypothetical protein, at 1,945,208 to 1,946,218
_001724
Position (kb) 1943
1944
1945
1946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1943.006 kb on + strand, within ABIE53_001722 at 1943.007 kb on - strand, within ABIE53_001722 at 1943.023 kb on - strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.178 kb on + strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.179 kb on - strand, within ABIE53_001722 at 1943.340 kb on + strand, within ABIE53_001722 at 1943.340 kb on + strand, within ABIE53_001722 at 1943.340 kb on + strand, within ABIE53_001722 at 1943.340 kb on + strand, within ABIE53_001722 at 1943.340 kb on + strand, within ABIE53_001722 at 1943.340 kb on + strand, within ABIE53_001722 at 1943.341 kb on - strand, within ABIE53_001722 at 1943.355 kb on + strand, within ABIE53_001722 at 1943.355 kb on + strand, within ABIE53_001722 at 1943.355 kb on + strand, within ABIE53_001722 at 1943.355 kb on + strand, within ABIE53_001722 at 1943.355 kb on + strand, within ABIE53_001722 at 1943.355 kb on + strand, within ABIE53_001722 at 1943.355 kb on + strand, within ABIE53_001722 at 1943.356 kb on - strand, within ABIE53_001722 at 1943.356 kb on - strand, within ABIE53_001722 at 1943.356 kb on - strand, within ABIE53_001722 at 1943.356 kb on - strand, within ABIE53_001722 at 1943.356 kb on - strand, within ABIE53_001722 at 1943.367 kb on + strand, within ABIE53_001722 at 1943.367 kb on + strand, within ABIE53_001722 at 1943.694 kb on + strand, within ABIE53_001722 at 1943.694 kb on + strand, within ABIE53_001722 at 1943.694 kb on + strand, within ABIE53_001722 at 1943.694 kb on + strand, within ABIE53_001722 at 1943.694 kb on + strand, within ABIE53_001722 at 1943.694 kb on + strand, within ABIE53_001722 at 1943.695 kb on - strand, within ABIE53_001722 at 1943.695 kb on - strand, within ABIE53_001722 at 1943.695 kb on - strand, within ABIE53_001722 at 1943.695 kb on - strand, within ABIE53_001722 at 1943.788 kb on - strand at 1943.858 kb on - strand at 1943.858 kb on - strand at 1943.858 kb on - strand at 1943.956 kb on + strand at 1943.957 kb on - strand at 1943.957 kb on - strand at 1944.191 kb on - strand, within ABIE53_001723 at 1944.191 kb on - strand, within ABIE53_001723 at 1944.293 kb on - strand, within ABIE53_001723 at 1944.728 kb on - strand, within ABIE53_001723 at 1944.728 kb on - strand, within ABIE53_001723 at 1944.728 kb on - strand, within ABIE53_001723 at 1944.731 kb on - strand, within ABIE53_001723 at 1944.731 kb on - strand, within ABIE53_001723 at 1945.091 kb on + strand at 1945.091 kb on + strand at 1945.091 kb on + strand at 1945.091 kb on + strand at 1945.091 kb on + strand at 1945.091 kb on + strand at 1945.092 kb on - strand at 1945.106 kb on - strand at 1945.196 kb on + strand at 1945.197 kb on - strand at 1945.197 kb on - strand at 1945.360 kb on + strand, within ABIE53_001724 at 1945.360 kb on + strand, within ABIE53_001724 at 1945.361 kb on - strand, within ABIE53_001724 at 1945.371 kb on + strand, within ABIE53_001724 at 1945.372 kb on - strand, within ABIE53_001724 at 1945.864 kb on + strand, within ABIE53_001724 at 1945.864 kb on + strand, within ABIE53_001724 at 1945.864 kb on + strand, within ABIE53_001724 at 1945.865 kb on - strand, within ABIE53_001724 at 1945.865 kb on - strand, within ABIE53_001724 at 1945.865 kb on - strand, within ABIE53_001724
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,943,006 + ABIE53_001722 0.36 +0.8 1,943,007 - ABIE53_001722 0.36 +1.3 1,943,023 - ABIE53_001722 0.37 -1.8 1,943,178 + ABIE53_001722 0.49 +0.9 1,943,178 + ABIE53_001722 0.49 -0.5 1,943,178 + ABIE53_001722 0.49 +1.3 1,943,178 + ABIE53_001722 0.49 +0.9 1,943,178 + ABIE53_001722 0.49 -1.3 1,943,178 + ABIE53_001722 0.49 -0.5 1,943,178 + ABIE53_001722 0.49 +0.1 1,943,178 + ABIE53_001722 0.49 -0.4 1,943,178 + ABIE53_001722 0.49 -0.6 1,943,178 + ABIE53_001722 0.49 -0.9 1,943,178 + ABIE53_001722 0.49 +0.5 1,943,179 - ABIE53_001722 0.49 +0.4 1,943,179 - ABIE53_001722 0.49 +0.4 1,943,179 - ABIE53_001722 0.49 -1.1 1,943,179 - ABIE53_001722 0.49 +0.9 1,943,179 - ABIE53_001722 0.49 -0.2 1,943,179 - ABIE53_001722 0.49 +0.9 1,943,179 - ABIE53_001722 0.49 -1.4 1,943,179 - ABIE53_001722 0.49 -1.3 1,943,179 - ABIE53_001722 0.49 +0.9 1,943,179 - ABIE53_001722 0.49 +1.1 1,943,179 - ABIE53_001722 0.49 -0.1 1,943,179 - ABIE53_001722 0.49 -0.1 1,943,179 - ABIE53_001722 0.49 +1.2 1,943,179 - ABIE53_001722 0.49 +1.7 1,943,179 - ABIE53_001722 0.49 -1.4 1,943,179 - ABIE53_001722 0.49 -1.9 1,943,179 - ABIE53_001722 0.49 +0.0 1,943,340 + ABIE53_001722 0.61 -0.3 1,943,340 + ABIE53_001722 0.61 +0.4 1,943,340 + ABIE53_001722 0.61 +0.4 1,943,340 + ABIE53_001722 0.61 +0.0 1,943,340 + ABIE53_001722 0.61 -0.4 1,943,340 + ABIE53_001722 0.61 +5.9 1,943,341 - ABIE53_001722 0.61 +0.9 1,943,355 + ABIE53_001722 0.62 -2.1 1,943,355 + ABIE53_001722 0.62 -0.1 1,943,355 + ABIE53_001722 0.62 +1.2 1,943,355 + ABIE53_001722 0.62 +0.3 1,943,355 + ABIE53_001722 0.62 -0.1 1,943,355 + ABIE53_001722 0.62 +0.5 1,943,355 + ABIE53_001722 0.62 +1.2 1,943,356 - ABIE53_001722 0.62 -0.3 1,943,356 - ABIE53_001722 0.62 -0.4 1,943,356 - ABIE53_001722 0.62 -0.5 1,943,356 - ABIE53_001722 0.62 -0.8 1,943,356 - ABIE53_001722 0.62 +0.6 1,943,367 + ABIE53_001722 0.63 +0.9 1,943,367 + ABIE53_001722 0.63 -0.1 1,943,694 + ABIE53_001722 0.87 +1.0 1,943,694 + ABIE53_001722 0.87 -0.1 1,943,694 + ABIE53_001722 0.87 +0.3 1,943,694 + ABIE53_001722 0.87 -1.5 1,943,694 + ABIE53_001722 0.87 -0.4 1,943,694 + ABIE53_001722 0.87 +0.8 1,943,695 - ABIE53_001722 0.87 -0.1 1,943,695 - ABIE53_001722 0.87 -2.6 1,943,695 - ABIE53_001722 0.87 +0.9 1,943,695 - ABIE53_001722 0.87 +0.9 1,943,788 - +1.4 1,943,858 - -1.4 1,943,858 - -1.9 1,943,858 - +0.9 1,943,956 + -0.1 1,943,957 - -1.1 1,943,957 - +0.1 1,944,191 - ABIE53_001723 0.19 -3.6 1,944,191 - ABIE53_001723 0.19 -3.5 1,944,293 - ABIE53_001723 0.27 -2.2 1,944,728 - ABIE53_001723 0.61 -3.6 1,944,728 - ABIE53_001723 0.61 -1.6 1,944,728 - ABIE53_001723 0.61 -1.9 1,944,731 - ABIE53_001723 0.62 +0.1 1,944,731 - ABIE53_001723 0.62 -2.8 1,945,091 + -0.1 1,945,091 + -0.1 1,945,091 + -3.2 1,945,091 + -3.2 1,945,091 + -2.8 1,945,091 + -1.6 1,945,092 - -3.2 1,945,106 - -3.7 1,945,196 + -2.8 1,945,197 - -1.7 1,945,197 - -2.1 1,945,360 + ABIE53_001724 0.15 -1.6 1,945,360 + ABIE53_001724 0.15 -3.1 1,945,361 - ABIE53_001724 0.15 -2.4 1,945,371 + ABIE53_001724 0.16 -2.6 1,945,372 - ABIE53_001724 0.16 +0.6 1,945,864 + ABIE53_001724 0.65 -3.1 1,945,864 + ABIE53_001724 0.65 -1.1 1,945,864 + ABIE53_001724 0.65 -3.1 1,945,865 - ABIE53_001724 0.65 -0.6 1,945,865 - ABIE53_001724 0.65 -3.3 1,945,865 - ABIE53_001724 0.65 -1.4
Or see this region's nucleotide sequence