Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2673

Experiment: MoLS4 with N2 gas (N) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2672 and glpA are separated by 555 nucleotidesglpA and sdhB are separated by 1 nucleotidessdhB and DVU2675 are separated by 221 nucleotides DVU2672: DVU2672 - glycine transporter (from data), at 2,783,384 to 2,784,007 DVU2672 DVU2673: glpA - anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation (TIGR), at 2,784,563 to 2,785,732 glpA DVU2674: sdhB - succinate dehydrogenase and fumarate reductase iron-sulfur protein (TIGR), at 2,785,734 to 2,786,453 sdhB DVU2675: DVU2675 - DNA-binding response regulator, LuxR family (TIGR), at 2,786,675 to 2,787,358 DVU2675 Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -1 0 1 2at 2783.598 kb on + strand, within DVU2672at 2783.631 kb on + strand, within DVU2672at 2783.644 kb on + strand, within DVU2672at 2783.652 kb on - strand, within DVU2672at 2783.652 kb on - strand, within DVU2672at 2783.684 kb on - strand, within DVU2672at 2783.684 kb on - strand, within DVU2672at 2783.693 kb on + strand, within DVU2672at 2783.732 kb on - strand, within DVU2672at 2783.766 kb on - strand, within DVU2672at 2783.784 kb on + strand, within DVU2672at 2783.828 kb on + strand, within DVU2672at 2783.887 kb on + strand, within DVU2672at 2783.890 kb on - strand, within DVU2672at 2783.898 kb on + strand, within DVU2672at 2783.960 kb on - strandat 2784.014 kb on - strandat 2784.215 kb on - strandat 2784.224 kb on - strandat 2784.255 kb on - strandat 2784.257 kb on - strandat 2784.395 kb on - strandat 2784.431 kb on - strandat 2784.554 kb on + strandat 2784.649 kb on + strandat 2784.657 kb on - strandat 2784.717 kb on + strand, within glpAat 2784.833 kb on - strand, within glpAat 2784.924 kb on + strand, within glpAat 2784.932 kb on - strand, within glpAat 2785.037 kb on + strand, within glpAat 2785.078 kb on - strand, within glpAat 2785.121 kb on - strand, within glpAat 2785.186 kb on - strand, within glpAat 2785.257 kb on + strand, within glpAat 2785.279 kb on - strand, within glpAat 2785.337 kb on - strand, within glpAat 2785.365 kb on + strand, within glpAat 2785.373 kb on - strand, within glpAat 2785.373 kb on - strand, within glpAat 2785.373 kb on - strand, within glpAat 2785.402 kb on + strand, within glpAat 2785.409 kb on + strand, within glpAat 2785.417 kb on - strand, within glpAat 2785.430 kb on + strand, within glpAat 2785.430 kb on + strand, within glpAat 2785.438 kb on - strand, within glpAat 2785.449 kb on + strand, within glpAat 2785.471 kb on - strand, within glpAat 2785.547 kb on - strand, within glpAat 2785.597 kb on + strand, within glpAat 2785.605 kb on - strand, within glpAat 2785.673 kb on + strandat 2785.686 kb on + strandat 2785.707 kb on - strandat 2785.754 kb on + strandat 2786.026 kb on + strand, within sdhBat 2786.032 kb on - strand, within sdhBat 2786.050 kb on + strand, within sdhBat 2786.199 kb on + strand, within sdhBat 2786.207 kb on - strand, within sdhBat 2786.304 kb on - strand, within sdhBat 2786.338 kb on + strand, within sdhBat 2786.341 kb on + strand, within sdhBat 2786.364 kb on + strand, within sdhBat 2786.375 kb on + strand, within sdhBat 2786.384 kb on - strandat 2786.429 kb on - strandat 2786.453 kb on + strandat 2786.495 kb on - strandat 2786.561 kb on - strandat 2786.608 kb on + strandat 2786.691 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N) with Tungstate 2mM
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2,783,598 + DVU2672 0.34 +0.5
2,783,631 + DVU2672 0.40 -0.2
2,783,644 + DVU2672 0.42 +0.6
2,783,652 - DVU2672 0.43 -0.2
2,783,652 - DVU2672 0.43 -0.0
2,783,684 - DVU2672 0.48 -0.3
2,783,684 - DVU2672 0.48 +0.3
2,783,693 + DVU2672 0.50 -0.0
2,783,732 - DVU2672 0.56 -0.1
2,783,766 - DVU2672 0.61 -1.3
2,783,784 + DVU2672 0.64 +0.1
2,783,828 + DVU2672 0.71 +0.0
2,783,887 + DVU2672 0.81 +0.1
2,783,890 - DVU2672 0.81 +0.1
2,783,898 + DVU2672 0.82 -0.3
2,783,960 - -0.4
2,784,014 - -0.6
2,784,215 - +0.3
2,784,224 - +0.1
2,784,255 - +0.8
2,784,257 - +0.1
2,784,395 - -0.3
2,784,431 - +0.3
2,784,554 + +0.5
2,784,649 + +0.8
2,784,657 - -0.5
2,784,717 + glpA DVU2673 0.13 -0.4
2,784,833 - glpA DVU2673 0.23 -0.4
2,784,924 + glpA DVU2673 0.31 -0.0
2,784,932 - glpA DVU2673 0.32 -0.1
2,785,037 + glpA DVU2673 0.41 +0.0
2,785,078 - glpA DVU2673 0.44 -0.3
2,785,121 - glpA DVU2673 0.48 -0.8
2,785,186 - glpA DVU2673 0.53 +0.2
2,785,257 + glpA DVU2673 0.59 +0.2
2,785,279 - glpA DVU2673 0.61 +0.8
2,785,337 - glpA DVU2673 0.66 -1.0
2,785,365 + glpA DVU2673 0.69 -0.9
2,785,373 - glpA DVU2673 0.69 -0.3
2,785,373 - glpA DVU2673 0.69 +0.8
2,785,373 - glpA DVU2673 0.69 -0.4
2,785,402 + glpA DVU2673 0.72 +0.8
2,785,409 + glpA DVU2673 0.72 +0.3
2,785,417 - glpA DVU2673 0.73 -1.0
2,785,430 + glpA DVU2673 0.74 -0.3
2,785,430 + glpA DVU2673 0.74 -1.1
2,785,438 - glpA DVU2673 0.75 +0.2
2,785,449 + glpA DVU2673 0.76 -0.8
2,785,471 - glpA DVU2673 0.78 +0.2
2,785,547 - glpA DVU2673 0.84 -0.3
2,785,597 + glpA DVU2673 0.88 -0.2
2,785,605 - glpA DVU2673 0.89 -1.2
2,785,673 + +1.8
2,785,686 + -0.1
2,785,707 - +1.0
2,785,754 + +0.6
2,786,026 + sdhB DVU2674 0.41 -0.6
2,786,032 - sdhB DVU2674 0.41 +0.4
2,786,050 + sdhB DVU2674 0.44 +0.4
2,786,199 + sdhB DVU2674 0.65 +0.8
2,786,207 - sdhB DVU2674 0.66 +0.6
2,786,304 - sdhB DVU2674 0.79 -0.7
2,786,338 + sdhB DVU2674 0.84 +1.8
2,786,341 + sdhB DVU2674 0.84 -0.7
2,786,364 + sdhB DVU2674 0.88 -0.1
2,786,375 + sdhB DVU2674 0.89 -0.1
2,786,384 - -0.9
2,786,429 - -0.0
2,786,453 + -0.7
2,786,495 - -0.2
2,786,561 - +0.1
2,786,608 + -0.8
2,786,691 + +1.2

Or see this region's nucleotide sequence