Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3365

Experiment: MoLS4 with N2 gas (N) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3364 and fmt are separated by 120 nucleotidesfmt and def overlap by 28 nucleotidesdef and aspS are separated by 302 nucleotides DVU3364: DVU3364 - conserved hypothetical protein (TIGR), at 3,534,750 to 3,535,673 DVU3364 DVU3365: fmt - methionyl-tRNA formyltransferase (TIGR), at 3,535,794 to 3,536,786 fmt DVU3366: def - polypeptide deformylase (TIGR), at 3,536,759 to 3,537,274 def DVU3367: aspS - aspartyl-tRNA synthetase (TIGR), at 3,537,577 to 3,539,409 aspS Position (kb) 3535 3536 3537Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3534.835 kb on + strandat 3534.840 kb on + strandat 3534.864 kb on + strand, within DVU3364at 3534.888 kb on - strand, within DVU3364at 3534.952 kb on - strand, within DVU3364at 3534.960 kb on - strand, within DVU3364at 3534.993 kb on - strand, within DVU3364at 3535.059 kb on + strand, within DVU3364at 3535.143 kb on - strand, within DVU3364at 3535.192 kb on - strand, within DVU3364at 3535.192 kb on - strand, within DVU3364at 3535.260 kb on + strand, within DVU3364at 3535.294 kb on - strand, within DVU3364at 3535.322 kb on + strand, within DVU3364at 3535.413 kb on - strand, within DVU3364at 3535.413 kb on - strand, within DVU3364at 3535.451 kb on + strand, within DVU3364at 3535.453 kb on - strand, within DVU3364at 3535.488 kb on - strand, within DVU3364at 3535.599 kb on - strandat 3535.670 kb on + strandat 3535.730 kb on + strandat 3535.730 kb on + strandat 3535.740 kb on - strandat 3535.758 kb on - strandat 3535.778 kb on + strandat 3535.786 kb on - strandat 3536.769 kb on - strandat 3537.285 kb on + strandat 3537.285 kb on + strandat 3537.292 kb on + strandat 3537.293 kb on - strandat 3537.293 kb on - strandat 3537.300 kb on - strandat 3537.300 kb on - strandat 3537.306 kb on + strandat 3537.324 kb on - strandat 3537.336 kb on - strandat 3537.397 kb on - strandat 3537.433 kb on + strandat 3537.457 kb on + strandat 3537.457 kb on + strandat 3537.457 kb on + strandat 3537.457 kb on + strandat 3537.465 kb on - strandat 3537.465 kb on - strandat 3537.489 kb on + strandat 3537.489 kb on + strandat 3537.497 kb on - strandat 3537.497 kb on - strandat 3537.517 kb on - strandat 3537.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N) with Tungstate 2mM
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3,534,835 + +0.2
3,534,840 + +0.2
3,534,864 + DVU3364 0.12 -0.1
3,534,888 - DVU3364 0.15 +1.3
3,534,952 - DVU3364 0.22 +1.0
3,534,960 - DVU3364 0.23 -0.2
3,534,993 - DVU3364 0.26 +0.5
3,535,059 + DVU3364 0.33 +0.6
3,535,143 - DVU3364 0.43 -0.2
3,535,192 - DVU3364 0.48 +0.3
3,535,192 - DVU3364 0.48 +1.6
3,535,260 + DVU3364 0.55 +0.8
3,535,294 - DVU3364 0.59 +0.4
3,535,322 + DVU3364 0.62 +1.4
3,535,413 - DVU3364 0.72 +1.2
3,535,413 - DVU3364 0.72 +1.4
3,535,451 + DVU3364 0.76 +1.6
3,535,453 - DVU3364 0.76 +2.2
3,535,488 - DVU3364 0.80 -0.9
3,535,599 - +1.5
3,535,670 + +0.4
3,535,730 + -0.6
3,535,730 + -1.2
3,535,740 - +0.8
3,535,758 - -0.7
3,535,778 + -0.6
3,535,786 - +0.1
3,536,769 - +2.8
3,537,285 + +0.3
3,537,285 + +0.6
3,537,292 + +2.2
3,537,293 - -0.9
3,537,293 - -0.9
3,537,300 - -0.8
3,537,300 - -0.9
3,537,306 + -1.9
3,537,324 - -0.4
3,537,336 - -0.3
3,537,397 - -1.7
3,537,433 + +0.0
3,537,457 + -0.3
3,537,457 + -0.2
3,537,457 + -0.4
3,537,457 + +0.4
3,537,465 - -0.5
3,537,465 - -0.0
3,537,489 + -0.1
3,537,489 + -0.2
3,537,497 - -1.0
3,537,497 - -0.6
3,537,517 - +2.0
3,537,602 + -1.4

Or see this region's nucleotide sequence