Experiment: MoLS4 with N2 gas (N) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVU2115 are separated by 199 nucleotides DVU2115 and DORF39640 are separated by 57 nucleotides DORF39640 and DVU2116 are separated by 40 nucleotides DVU2116 and DVU2117 are separated by 220 nucleotides DVU2117 and DVU2118 are separated by 9 nucleotides
DVU2114: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 2,210,047 to 2,211,435
atoC
DVU2115: DVU2115 - hypothetical protein (TIGR), at 2,211,635 to 2,211,826
DVU2115
DORF39640: DORF39640 - SEED: Flp pilus assembly protein, pilin Flp, at 2,211,884 to 2,212,060
DORF39640
DVU2116: DVU2116 - pilin, putative (TIGR), at 2,212,101 to 2,212,274
DVU2116
DVU2117: DVU2117 - membrane protein, putative (TIGR), at 2,212,495 to 2,213,061
DVU2117
DVU2118: DVU2118 - conserved hypothetical protein (TIGR), at 2,213,071 to 2,213,889
DVU2118
Position (kb)
2212
2213 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2211.173 kb on + strand, within atoC at 2211.244 kb on - strand, within atoC at 2211.258 kb on + strand, within atoC at 2211.271 kb on - strand, within atoC at 2211.348 kb on + strand at 2211.356 kb on - strand at 2211.460 kb on - strand at 2211.481 kb on + strand at 2211.486 kb on + strand at 2211.638 kb on + strand at 2211.704 kb on + strand, within DVU2115 at 2211.914 kb on + strand, within DORF39640 at 2211.994 kb on + strand, within DORF39640 at 2211.999 kb on + strand, within DORF39640 at 2212.021 kb on + strand, within DORF39640 at 2212.121 kb on + strand, within DVU2116 at 2212.197 kb on + strand, within DVU2116 at 2212.213 kb on + strand, within DVU2116 at 2212.216 kb on - strand, within DVU2116 at 2212.221 kb on - strand, within DVU2116 at 2212.269 kb on + strand at 2212.283 kb on - strand at 2212.301 kb on + strand at 2212.310 kb on + strand at 2212.339 kb on + strand at 2212.347 kb on + strand at 2212.347 kb on + strand at 2212.362 kb on - strand at 2212.412 kb on + strand at 2212.506 kb on + strand at 2212.571 kb on + strand, within DVU2117 at 2212.617 kb on + strand, within DVU2117 at 2212.624 kb on + strand, within DVU2117 at 2212.672 kb on - strand, within DVU2117 at 2212.698 kb on - strand, within DVU2117 at 2212.705 kb on - strand, within DVU2117 at 2212.788 kb on + strand, within DVU2117 at 2213.009 kb on - strand at 2213.045 kb on + strand at 2213.055 kb on + strand at 2213.078 kb on + strand at 2213.102 kb on - strand at 2213.139 kb on - strand at 2213.152 kb on - strand at 2213.162 kb on - strand, within DVU2118 at 2213.187 kb on + strand, within DVU2118 at 2213.253 kb on + strand, within DVU2118 at 2213.253 kb on + strand, within DVU2118 at 2213.253 kb on + strand, within DVU2118 at 2213.261 kb on - strand, within DVU2118 at 2213.261 kb on - strand, within DVU2118 at 2213.261 kb on - strand, within DVU2118
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N) with Tungstate 2mM remove 2,211,173 + atoC DVU2114 0.81 -0.3 2,211,244 - atoC DVU2114 0.86 +0.1 2,211,258 + atoC DVU2114 0.87 +0.8 2,211,271 - atoC DVU2114 0.88 -2.0 2,211,348 + -0.3 2,211,356 - +1.3 2,211,460 - -0.2 2,211,481 + +0.8 2,211,486 + +0.1 2,211,638 + -0.1 2,211,704 + DVU2115 0.36 +0.5 2,211,914 + DORF39640 0.17 +0.4 2,211,994 + DORF39640 0.62 -0.6 2,211,999 + DORF39640 0.65 -0.0 2,212,021 + DORF39640 0.77 +0.4 2,212,121 + DVU2116 0.11 -1.8 2,212,197 + DVU2116 0.55 -0.5 2,212,213 + DVU2116 0.64 -1.1 2,212,216 - DVU2116 0.66 -0.3 2,212,221 - DVU2116 0.69 -0.6 2,212,269 + -0.1 2,212,283 - -1.4 2,212,301 + -0.6 2,212,310 + -0.1 2,212,339 + -0.8 2,212,347 + -0.8 2,212,347 + -0.3 2,212,362 - +0.5 2,212,412 + +0.0 2,212,506 + -0.5 2,212,571 + DVU2117 0.13 -0.4 2,212,617 + DVU2117 0.22 +1.6 2,212,624 + DVU2117 0.23 +0.0 2,212,672 - DVU2117 0.31 -0.3 2,212,698 - DVU2117 0.36 -1.6 2,212,705 - DVU2117 0.37 -0.0 2,212,788 + DVU2117 0.52 +0.0 2,213,009 - +1.5 2,213,045 + +0.3 2,213,055 + +0.0 2,213,078 + +0.7 2,213,102 - +0.0 2,213,139 - -0.3 2,213,152 - +0.2 2,213,162 - DVU2118 0.11 -0.1 2,213,187 + DVU2118 0.14 +0.2 2,213,253 + DVU2118 0.22 +1.5 2,213,253 + DVU2118 0.22 -0.3 2,213,253 + DVU2118 0.22 -0.2 2,213,261 - DVU2118 0.23 +3.4 2,213,261 - DVU2118 0.23 -0.3 2,213,261 - DVU2118 0.23 -0.7
Or see this region's nucleotide sequence