Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2625

Experiment: Post-colonization (Day 7) - Cage1B;Mouse5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 7) - Cage1B;Mouse5
3,270,050	+				-2.7
3,270,054	+				-1.8
3,270,130	+				-1.2
3,270,133	+		BT2624	0.10	-2.9
3,270,163	+		BT2624	0.13	-1.7
3,270,194	+		BT2624	0.16	-2.0
3,270,253	+		BT2624	0.22	-0.5
3,270,332	+		BT2624	0.31	-1.4
3,270,369	+		BT2624	0.34	-0.8
3,270,396	-		BT2624	0.37	-0.6
3,270,417	+		BT2624	0.39	-1.8
3,270,423	-		BT2624	0.40	+1.4
3,270,440	+		BT2624	0.42	-0.7
3,270,440	+		BT2624	0.42	-2.6
3,270,461	+		BT2624	0.44	-0.1
3,270,477	-		BT2624	0.46	-0.4
3,270,557	+		BT2624	0.54	-3.3
3,270,603	+		BT2624	0.59	-1.5
3,270,604	-		BT2624	0.59	-0.6
3,270,605	+		BT2624	0.59	-1.6
3,270,605	+		BT2624	0.59	-0.2
3,270,612	-		BT2624	0.60	+0.4
3,270,620	+		BT2624	0.60	-1.9
3,270,636	-		BT2624	0.62	-0.9
3,270,676	+		BT2624	0.66	-4.5
3,270,676	+		BT2624	0.66	-2.5
3,270,676	+		BT2624	0.66	-3.5
3,270,703	+		BT2624	0.69	+0.5
3,270,703	+		BT2624	0.69	-0.6
3,270,719	+		BT2624	0.71	+0.8
3,270,738	-		BT2624	0.73	-0.9
3,270,738	-		BT2624	0.73	-0.9
3,270,748	-		BT2624	0.74	+0.1
3,270,846	-		BT2624	0.84	+0.1
3,270,895	+		BT2624	0.89	-0.6
3,270,895	+		BT2624	0.89	+1.1
3,270,954	+				-1.7
3,271,058	+				-1.1
3,271,135	+				-1.4
3,271,141	+				-0.8
3,271,146	+				-1.7
3,271,209	+				-0.7
3,271,209	+				+0.3
3,271,211	+				-1.7
3,271,222	+		BT2625	0.11	-1.0
3,271,222	+		BT2625	0.11	-1.7
3,271,222	+		BT2625	0.11	+0.1
3,271,233	+		BT2625	0.11	-0.6
3,271,233	+		BT2625	0.11	-2.4
3,271,233	+		BT2625	0.11	+0.4
3,271,278	-		BT2625	0.13	+0.8
3,271,297	+		BT2625	0.14	-1.3
3,271,399	+		BT2625	0.19	-1.7
3,271,399	+		BT2625	0.19	-1.7
3,271,401	+		BT2625	0.20	-2.1
3,271,438	+		BT2625	0.21	-2.4
3,271,438	+		BT2625	0.21	-1.3
3,271,451	-		BT2625	0.22	+2.0
3,271,467	+		BT2625	0.23	-0.2
3,271,475	+		BT2625	0.23	+0.2
3,271,558	+		BT2625	0.27	-0.6
3,271,558	+		BT2625	0.27	+1.1
3,271,560	+		BT2625	0.28	-3.2
3,271,606	+		BT2625	0.30	-1.8
3,271,606	+		BT2625	0.30	-1.1
3,271,617	+		BT2625	0.30	-1.1
3,271,617	+		BT2625	0.30	+0.8
3,271,617	+		BT2625	0.30	+0.8
3,271,618	-		BT2625	0.31	+0.4
3,271,618	-		BT2625	0.31	-0.8
3,271,656	-		BT2625	0.32	+0.7
3,271,657	+		BT2625	0.32	-2.5
3,271,657	+		BT2625	0.32	-2.6
3,271,658	-		BT2625	0.33	+0.1
3,271,672	+		BT2625	0.33	-0.9
3,271,681	+		BT2625	0.34	-0.2
3,271,687	+		BT2625	0.34	-0.5
3,271,749	+		BT2625	0.37	-1.5
3,271,749	+		BT2625	0.37	-1.4
3,271,749	+		BT2625	0.37	-1.3
3,271,749	+		BT2625	0.37	-0.4
3,271,750	-		BT2625	0.37	-0.4
3,271,750	-		BT2625	0.37	-0.2
3,271,750	-		BT2625	0.37	-0.6
3,271,753	+		BT2625	0.37	+0.3
3,271,876	+		BT2625	0.44	-2.5
3,271,876	+		BT2625	0.44	-0.7
3,271,877	-		BT2625	0.44	-0.2
3,271,878	+		BT2625	0.44	-0.9
3,271,882	+		BT2625	0.44	-1.0
3,271,882	+		BT2625	0.44	-1.0
3,271,886	+		BT2625	0.44	-1.7
3,271,939	+		BT2625	0.47	-2.6
3,271,957	+		BT2625	0.48	-0.4
3,271,957	+		BT2625	0.48	+0.9
3,271,969	+		BT2625	0.48	+0.1
3,271,969	+		BT2625	0.48	-1.0
3,271,972	+		BT2625	0.48	-0.4
3,272,057	+		BT2625	0.53	-0.6
3,272,057	+		BT2625	0.53	-0.8
3,272,059	+		BT2625	0.53	-0.7
3,272,122	+		BT2625	0.56	-1.0
3,272,123	-		BT2625	0.56	-1.2
3,272,148	+		BT2625	0.57	-0.4
3,272,162	+		BT2625	0.58	-0.9
3,272,224	+		BT2625	0.61	-2.4
3,272,224	+		BT2625	0.61	-1.3
3,272,226	+		BT2625	0.61	+0.1
3,272,227	-		BT2625	0.61	+1.4
3,272,286	-		BT2625	0.64	-0.2
3,272,290	+		BT2625	0.64	-0.1
3,272,291	-		BT2625	0.64	-1.6
3,272,292	+		BT2625	0.64	-0.8
3,272,292	+		BT2625	0.64	-1.1
3,272,293	-		BT2625	0.65	-2.1
3,272,302	+		BT2625	0.65	+0.7
3,272,337	+		BT2625	0.67	-1.1
3,272,337	+		BT2625	0.67	+0.4
3,272,371	+		BT2625	0.68	-2.4
3,272,374	+		BT2625	0.69	-1.6
3,272,375	-		BT2625	0.69	+0.8
3,272,375	-		BT2625	0.69	-1.1
3,272,427	+		BT2625	0.71	-1.5
3,272,428	-		BT2625	0.71	-3.0
3,272,445	+		BT2625	0.72	-1.1
3,272,466	+		BT2625	0.73	-1.3
3,272,466	+		BT2625	0.73	-0.8
3,272,466	+		BT2625	0.73	-1.1
3,272,474	+		BT2625	0.74	-1.2
3,272,486	-		BT2625	0.74	-0.3
3,272,489	-		BT2625	0.74	-0.2
3,272,547	+		BT2625	0.77	+0.1
3,272,548	-		BT2625	0.77	-0.2
3,272,553	+		BT2625	0.78	-0.6
3,272,553	+		BT2625	0.78	+0.4
3,272,554	-		BT2625	0.78	+0.7
3,272,588	+		BT2625	0.79	-1.8
3,272,654	+		BT2625	0.83	-1.6
3,272,654	+		BT2625	0.83	-1.4
3,272,662	+		BT2625	0.83	+1.4
3,272,665	-		BT2625	0.83	-0.4
3,272,669	-		BT2625	0.84	-1.1
3,272,736	-		BT2625	0.87	-0.8
3,272,749	+		BT2625	0.88	-1.7
3,272,759	-		BT2625	0.88	-1.4
3,272,759	-		BT2625	0.88	+0.7
3,272,796	+		BT2625	0.90	-0.8
3,272,796	+		BT2625	0.90	-1.6
3,272,849	+				-1.1
3,272,853	+				-0.2
3,272,876	-				-0.4
3,272,893	-				-1.2
3,272,908	+				-1.2
3,272,921	+				-2.1
3,272,936	-				-0.8
3,272,976	-				-0.2
3,273,017	+				-0.1
3,273,047	+				+0.7
3,273,068	+				-1.1
3,273,099	+				-0.3
3,273,146	+				-1.3
3,273,220	+				-0.8
3,273,260	+				-1.6
3,273,263	+				-2.4
3,273,266	+				+0.3
3,273,296	+				-0.9
3,273,314	+				-0.6
3,273,315	-				+0.8
3,273,342	+		BT2626	0.11	-0.0
3,273,350	+		BT2626	0.11	+0.8
3,273,378	+		BT2626	0.12	+0.1
3,273,378	+		BT2626	0.12	+3.6
3,273,399	+		BT2626	0.13	-1.1
3,273,399	+		BT2626	0.13	-1.4
3,273,412	+		BT2626	0.13	-2.2
3,273,486	+		BT2626	0.15	-0.8
3,273,500	+		BT2626	0.16	-4.1
3,273,520	+		BT2626	0.17	-3.0
3,273,520	+		BT2626	0.17	+2.1
3,273,535	+		BT2626	0.17	-1.5
3,273,535	+		BT2626	0.17	+0.4
3,273,567	+		BT2626	0.18	-1.1
3,273,567	+		BT2626	0.18	-0.6
3,273,567	+		BT2626	0.18	-2.3
3,273,567	+		BT2626	0.18	-1.5
3,273,567	+		BT2626	0.18	-2.9
3,273,591	+		BT2626	0.19	-0.2
3,273,592	-		BT2626	0.19	+0.1
3,273,605	+		BT2626	0.19	-1.2
3,273,605	+		BT2626	0.19	-3.3
3,273,605	+		BT2626	0.19	-1.3
3,273,605	+		BT2626	0.19	+1.4
3,273,622	+		BT2626	0.20	-0.1
3,273,650	+		BT2626	0.21	-2.6
3,273,655	-		BT2626	0.21	+0.8
3,273,671	+		BT2626	0.21	-1.4
3,273,704	+		BT2626	0.22	-1.7
3,273,704	+		BT2626	0.22	-0.8
3,273,733	+		BT2626	0.23	-2.1
3,273,733	+		BT2626	0.23	-0.6
3,273,750	+		BT2626	0.24	+1.0
3,273,764	+		BT2626	0.24	-0.3
3,273,815	+		BT2626	0.26	-0.4
3,273,837	-		BT2626	0.27	-0.9
3,273,837	-		BT2626	0.27	-1.1
3,273,889	+		BT2626	0.28	-0.9
3,273,910	-		BT2626	0.29	-1.2
3,273,967	+		BT2626	0.31	-2.1
3,273,967	+		BT2626	0.31	-0.8