Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0373

Experiment: Post-colonization (Day 7) - Cage1B;Mouse5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0372 and BT0373 are separated by 228 nucleotidesBT0373 and BT0374 are separated by 148 nucleotides BT0372: BT0372 - aldose 1-epimerase precursor (NCBI ptt file), at 458,002 to 459,099 BT0372 BT0373: BT0373 - mannose-6-phosphate isomerase (NCBI ptt file), at 459,328 to 460,299 BT0373 BT0374: BT0374 - conserved hypothetical protein (NCBI ptt file), at 460,448 to 461,998 BT0374 Position (kb) 459 460 461Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 458.467 kb on - strand, within BT0372at 458.467 kb on - strand, within BT0372at 458.476 kb on - strand, within BT0372at 459.280 kb on + strandat 460.312 kb on - strandat 460.320 kb on + strandat 460.408 kb on + strandat 460.408 kb on + strandat 460.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Post-colonization (Day 7) - Cage1B;Mouse5
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458,467 - BT0372 0.42 -1.7
458,467 - BT0372 0.42 -2.0
458,476 - BT0372 0.43 -2.0
459,280 + -2.2
460,312 - -3.8
460,320 + -0.5
460,408 + -1.0
460,408 + -0.6
460,430 + -0.4

Or see this region's nucleotide sequence