Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1479

Experiment: MoYLS4 with Rubidium Chloride 100mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1477 and DVU1478 are separated by 283 nucleotidesDVU1478 and DVU1479 are separated by 8 nucleotidesDVU1479 and DVU1480 are separated by 40 nucleotidesDVU1480 and DVU1481 are separated by 58 nucleotides DVU1477: DVU1477 - hypothetical protein (TIGR), at 1,557,107 to 1,557,733 DVU1477 DVU1478: DVU1478 - hypothetical protein (TIGR), at 1,558,017 to 1,558,655 DVU1478 DVU1479: DVU1479 - conserved hypothetical protein (TIGR), at 1,558,664 to 1,559,671 DVU1479 DVU1480: DVU1480 - conserved domain protein (TIGR), at 1,559,712 to 1,560,071 DVU1480 DVU1481: DVU1481 - nuclease domain protein (TIGR), at 1,560,130 to 1,560,630 DVU1481 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -2 -1 0 1 2at 1557.666 kb on + strand, within DVU1477at 1557.669 kb on + strand, within DVU1477at 1557.757 kb on - strandat 1557.790 kb on - strandat 1557.790 kb on - strandat 1558.480 kb on + strand, within DVU1478at 1558.641 kb on + strandat 1559.070 kb on + strand, within DVU1479at 1559.144 kb on - strand, within DVU1479at 1559.761 kb on + strand, within DVU1480at 1559.798 kb on + strand, within DVU1480at 1559.808 kb on + strand, within DVU1480at 1559.874 kb on - strand, within DVU1480at 1559.910 kb on - strand, within DVU1480at 1559.957 kb on - strand, within DVU1480at 1560.015 kb on + strand, within DVU1480at 1560.043 kb on - strandat 1560.043 kb on - strandat 1560.045 kb on - strandat 1560.248 kb on - strand, within DVU1481at 1560.295 kb on + strand, within DVU1481at 1560.295 kb on + strand, within DVU1481at 1560.295 kb on + strand, within DVU1481at 1560.295 kb on + strand, within DVU1481at 1560.295 kb on + strand, within DVU1481at 1560.298 kb on - strand, within DVU1481at 1560.303 kb on - strand, within DVU1481at 1560.303 kb on - strand, within DVU1481at 1560.303 kb on - strand, within DVU1481at 1560.303 kb on - strand, within DVU1481at 1560.343 kb on - strand, within DVU1481at 1560.370 kb on - strand, within DVU1481at 1560.411 kb on - strand, within DVU1481at 1560.441 kb on + strand, within DVU1481at 1560.449 kb on - strand, within DVU1481at 1560.459 kb on + strand, within DVU1481at 1560.465 kb on + strand, within DVU1481at 1560.482 kb on + strand, within DVU1481at 1560.482 kb on + strand, within DVU1481at 1560.482 kb on + strand, within DVU1481at 1560.490 kb on - strand, within DVU1481at 1560.490 kb on - strand, within DVU1481at 1560.490 kb on - strand, within DVU1481at 1560.590 kb on + strandat 1560.607 kb on + strandat 1560.610 kb on - strandat 1560.610 kb on - strandat 1560.640 kb on + strandat 1560.670 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rubidium Chloride 100mM
remove
1,557,666 + DVU1477 0.89 +1.7
1,557,669 + DVU1477 0.90 +2.0
1,557,757 - +1.1
1,557,790 - -1.5
1,557,790 - -0.1
1,558,480 + DVU1478 0.72 +1.4
1,558,641 + +0.1
1,559,070 + DVU1479 0.40 -0.2
1,559,144 - DVU1479 0.48 -0.3
1,559,761 + DVU1480 0.14 -0.1
1,559,798 + DVU1480 0.24 -0.2
1,559,808 + DVU1480 0.27 -0.6
1,559,874 - DVU1480 0.45 -0.3
1,559,910 - DVU1480 0.55 -0.2
1,559,957 - DVU1480 0.68 -0.3
1,560,015 + DVU1480 0.84 -1.2
1,560,043 - +0.7
1,560,043 - -0.6
1,560,045 - -1.2
1,560,248 - DVU1481 0.24 -0.4
1,560,295 + DVU1481 0.33 -0.8
1,560,295 + DVU1481 0.33 +0.1
1,560,295 + DVU1481 0.33 +0.0
1,560,295 + DVU1481 0.33 +0.0
1,560,295 + DVU1481 0.33 -0.4
1,560,298 - DVU1481 0.34 +2.7
1,560,303 - DVU1481 0.35 +1.1
1,560,303 - DVU1481 0.35 -0.4
1,560,303 - DVU1481 0.35 +1.3
1,560,303 - DVU1481 0.35 -1.2
1,560,343 - DVU1481 0.43 -0.2
1,560,370 - DVU1481 0.48 -0.5
1,560,411 - DVU1481 0.56 -0.3
1,560,441 + DVU1481 0.62 +0.3
1,560,449 - DVU1481 0.64 -0.1
1,560,459 + DVU1481 0.66 -0.4
1,560,465 + DVU1481 0.67 -0.5
1,560,482 + DVU1481 0.70 -0.4
1,560,482 + DVU1481 0.70 -0.8
1,560,482 + DVU1481 0.70 -0.7
1,560,490 - DVU1481 0.72 +0.1
1,560,490 - DVU1481 0.72 -0.7
1,560,490 - DVU1481 0.72 -0.3
1,560,590 + +0.1
1,560,607 + -0.3
1,560,610 - -0.5
1,560,610 - -0.5
1,560,640 + -0.6
1,560,670 - -1.8

Or see this region's nucleotide sequence