Experiment: MoYLS4 with Rubidium Chloride 100mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1477 and DVU1478 are separated by 283 nucleotides DVU1478 and DVU1479 are separated by 8 nucleotides DVU1479 and DVU1480 are separated by 40 nucleotides DVU1480 and DVU1481 are separated by 58 nucleotides
DVU1477: DVU1477 - hypothetical protein (TIGR), at 1,557,107 to 1,557,733
DVU1477
DVU1478: DVU1478 - hypothetical protein (TIGR), at 1,558,017 to 1,558,655
DVU1478
DVU1479: DVU1479 - conserved hypothetical protein (TIGR), at 1,558,664 to 1,559,671
DVU1479
DVU1480: DVU1480 - conserved domain protein (TIGR), at 1,559,712 to 1,560,071
DVU1480
DVU1481: DVU1481 - nuclease domain protein (TIGR), at 1,560,130 to 1,560,630
DVU1481
Position (kb)
1558
1559
1560 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1557.666 kb on + strand, within DVU1477 at 1557.669 kb on + strand, within DVU1477 at 1557.757 kb on - strand at 1557.790 kb on - strand at 1557.790 kb on - strand at 1558.480 kb on + strand, within DVU1478 at 1558.641 kb on + strand at 1559.070 kb on + strand, within DVU1479 at 1559.144 kb on - strand, within DVU1479 at 1559.761 kb on + strand, within DVU1480 at 1559.798 kb on + strand, within DVU1480 at 1559.808 kb on + strand, within DVU1480 at 1559.874 kb on - strand, within DVU1480 at 1559.910 kb on - strand, within DVU1480 at 1559.957 kb on - strand, within DVU1480 at 1560.015 kb on + strand, within DVU1480 at 1560.043 kb on - strand at 1560.043 kb on - strand at 1560.045 kb on - strand at 1560.248 kb on - strand, within DVU1481 at 1560.295 kb on + strand, within DVU1481 at 1560.295 kb on + strand, within DVU1481 at 1560.295 kb on + strand, within DVU1481 at 1560.295 kb on + strand, within DVU1481 at 1560.295 kb on + strand, within DVU1481 at 1560.298 kb on - strand, within DVU1481 at 1560.303 kb on - strand, within DVU1481 at 1560.303 kb on - strand, within DVU1481 at 1560.303 kb on - strand, within DVU1481 at 1560.303 kb on - strand, within DVU1481 at 1560.343 kb on - strand, within DVU1481 at 1560.370 kb on - strand, within DVU1481 at 1560.411 kb on - strand, within DVU1481 at 1560.441 kb on + strand, within DVU1481 at 1560.449 kb on - strand, within DVU1481 at 1560.459 kb on + strand, within DVU1481 at 1560.465 kb on + strand, within DVU1481 at 1560.482 kb on + strand, within DVU1481 at 1560.482 kb on + strand, within DVU1481 at 1560.482 kb on + strand, within DVU1481 at 1560.490 kb on - strand, within DVU1481 at 1560.490 kb on - strand, within DVU1481 at 1560.490 kb on - strand, within DVU1481 at 1560.590 kb on + strand at 1560.607 kb on + strand at 1560.610 kb on - strand at 1560.610 kb on - strand at 1560.640 kb on + strand at 1560.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rubidium Chloride 100mM remove 1,557,666 + DVU1477 0.89 +1.7 1,557,669 + DVU1477 0.90 +2.0 1,557,757 - +1.1 1,557,790 - -1.5 1,557,790 - -0.1 1,558,480 + DVU1478 0.72 +1.4 1,558,641 + +0.1 1,559,070 + DVU1479 0.40 -0.2 1,559,144 - DVU1479 0.48 -0.3 1,559,761 + DVU1480 0.14 -0.1 1,559,798 + DVU1480 0.24 -0.2 1,559,808 + DVU1480 0.27 -0.6 1,559,874 - DVU1480 0.45 -0.3 1,559,910 - DVU1480 0.55 -0.2 1,559,957 - DVU1480 0.68 -0.3 1,560,015 + DVU1480 0.84 -1.2 1,560,043 - +0.7 1,560,043 - -0.6 1,560,045 - -1.2 1,560,248 - DVU1481 0.24 -0.4 1,560,295 + DVU1481 0.33 -0.8 1,560,295 + DVU1481 0.33 +0.1 1,560,295 + DVU1481 0.33 +0.0 1,560,295 + DVU1481 0.33 +0.0 1,560,295 + DVU1481 0.33 -0.4 1,560,298 - DVU1481 0.34 +2.7 1,560,303 - DVU1481 0.35 +1.1 1,560,303 - DVU1481 0.35 -0.4 1,560,303 - DVU1481 0.35 +1.3 1,560,303 - DVU1481 0.35 -1.2 1,560,343 - DVU1481 0.43 -0.2 1,560,370 - DVU1481 0.48 -0.5 1,560,411 - DVU1481 0.56 -0.3 1,560,441 + DVU1481 0.62 +0.3 1,560,449 - DVU1481 0.64 -0.1 1,560,459 + DVU1481 0.66 -0.4 1,560,465 + DVU1481 0.67 -0.5 1,560,482 + DVU1481 0.70 -0.4 1,560,482 + DVU1481 0.70 -0.8 1,560,482 + DVU1481 0.70 -0.7 1,560,490 - DVU1481 0.72 +0.1 1,560,490 - DVU1481 0.72 -0.7 1,560,490 - DVU1481 0.72 -0.3 1,560,590 + +0.1 1,560,607 + -0.3 1,560,610 - -0.5 1,560,610 - -0.5 1,560,640 + -0.6 1,560,670 - -1.8
Or see this region's nucleotide sequence