Experiment: MoYLS4 with Rubidium Chloride 100mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hom and DVU0891 are separated by 1 nucleotides DVU0891 and aroK-1 are separated by 123 nucleotides aroK-1 and DVU0893 are separated by 28 nucleotides
DVU0890: hom - homoserine dehydrogenase (TIGR), at 981,134 to 982,408
hom
DVU0891: DVU0891 - aminotransferase, classes I and II (TIGR), at 982,410 to 983,603
DVU0891
DVU0892: aroK-1 - shikimate kinase (TIGR), at 983,727 to 984,254
aroK-1
DVU0893: DVU0893 - universal stress protein family (TIGR), at 984,283 to 984,765
DVU0893
Position (kb) 982
983
984 Strain fitness (log2 ratio) -2
-1
0
1
2 at 982.009 kb on - strand, within hom at 982.425 kb on - strand at 982.482 kb on + strand at 982.579 kb on - strand, within DVU0891 at 982.754 kb on - strand, within DVU0891 at 982.759 kb on - strand, within DVU0891 at 982.806 kb on - strand, within DVU0891 at 982.822 kb on - strand, within DVU0891 at 982.867 kb on - strand, within DVU0891 at 982.890 kb on - strand, within DVU0891 at 982.942 kb on - strand, within DVU0891 at 983.389 kb on - strand, within DVU0891 at 983.513 kb on - strand at 983.629 kb on + strand at 983.655 kb on - strand at 983.661 kb on + strand at 983.713 kb on + strand at 983.726 kb on - strand at 983.953 kb on - strand, within aroK-1 at 984.079 kb on + strand, within aroK-1 at 984.189 kb on - strand, within aroK-1 at 984.227 kb on - strand at 984.259 kb on + strand at 984.281 kb on - strand at 984.356 kb on + strand, within DVU0893 at 984.377 kb on + strand, within DVU0893 at 984.385 kb on - strand, within DVU0893 at 984.451 kb on + strand, within DVU0893 at 984.515 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rubidium Chloride 100mM remove 982,009 - hom DVU0890 0.69 +0.7 982,425 - -0.5 982,482 + -0.8 982,579 - DVU0891 0.14 -0.9 982,754 - DVU0891 0.29 -0.5 982,759 - DVU0891 0.29 -0.7 982,806 - DVU0891 0.33 +2.7 982,822 - DVU0891 0.35 -0.1 982,867 - DVU0891 0.38 +1.1 982,890 - DVU0891 0.40 -1.2 982,942 - DVU0891 0.45 -0.7 983,389 - DVU0891 0.82 +0.2 983,513 - -1.8 983,629 + -0.6 983,655 - -1.1 983,661 + -0.3 983,713 + -0.2 983,726 - +0.6 983,953 - aroK-1 DVU0892 0.43 +1.7 984,079 + aroK-1 DVU0892 0.67 -0.9 984,189 - aroK-1 DVU0892 0.88 -1.1 984,227 - -0.2 984,259 + -0.8 984,281 - -0.3 984,356 + DVU0893 0.15 +0.6 984,377 + DVU0893 0.19 -0.3 984,385 - DVU0893 0.21 -2.1 984,451 + DVU0893 0.35 -0.3 984,515 + DVU0893 0.48 +0.1 984,529 + DVU0893 0.51 -0.6 984,529 + DVU0893 0.51 +0.3
Or see this region's nucleotide sequence