Experiment: Post-colonization (Day 4) - Cage1B;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0669 and BT0670 are separated by 26 nucleotides BT0670 and BT0671 overlap by 4 nucleotides
BT0669: BT0669 - putative cation efflux system protein (NCBI ptt file), at 824,498 to 825,586
BT0669
BT0670: BT0670 - putative cation efflux system (NCBI ptt file), at 825,613 to 828,720
BT0670
BT0671: BT0671 - outer membrane protein TolC, putative (NCBI ptt file), at 828,717 to 830,216
BT0671
Position (kb) 825
826
827
828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 824.747 kb on - strand, within BT0669 at 824.827 kb on - strand, within BT0669 at 824.847 kb on + strand, within BT0669 at 824.949 kb on + strand, within BT0669 at 825.014 kb on - strand, within BT0669 at 825.014 kb on - strand, within BT0669 at 825.080 kb on - strand, within BT0669 at 825.098 kb on - strand, within BT0669 at 825.098 kb on - strand, within BT0669 at 825.101 kb on - strand, within BT0669 at 825.175 kb on + strand, within BT0669 at 825.195 kb on - strand, within BT0669 at 825.225 kb on + strand, within BT0669 at 825.283 kb on - strand at 825.403 kb on - strand, within BT0669 at 825.438 kb on - strand, within BT0669 at 825.526 kb on + strand at 825.593 kb on - strand at 825.613 kb on - strand at 825.691 kb on + strand at 825.730 kb on - strand at 825.741 kb on + strand at 825.765 kb on + strand at 825.843 kb on + strand at 825.896 kb on - strand at 825.942 kb on - strand, within BT0670 at 825.958 kb on + strand, within BT0670 at 826.024 kb on + strand, within BT0670 at 826.057 kb on + strand, within BT0670 at 826.057 kb on + strand, within BT0670 at 826.060 kb on - strand, within BT0670 at 826.309 kb on + strand, within BT0670 at 826.314 kb on + strand, within BT0670 at 826.314 kb on + strand, within BT0670 at 826.394 kb on + strand, within BT0670 at 826.421 kb on + strand, within BT0670 at 826.509 kb on + strand, within BT0670 at 826.553 kb on + strand, within BT0670 at 826.950 kb on + strand, within BT0670 at 826.951 kb on - strand at 826.987 kb on - strand, within BT0670 at 827.143 kb on - strand, within BT0670 at 827.225 kb on + strand, within BT0670 at 827.276 kb on + strand, within BT0670 at 827.277 kb on - strand, within BT0670 at 827.405 kb on + strand, within BT0670 at 827.406 kb on - strand, within BT0670 at 827.514 kb on + strand, within BT0670 at 828.062 kb on - strand, within BT0670 at 828.345 kb on + strand, within BT0670 at 828.396 kb on - strand, within BT0670 at 828.663 kb on + strand at 828.664 kb on - strand at 828.778 kb on + strand at 828.781 kb on - strand at 828.871 kb on - strand, within BT0671 at 829.021 kb on - strand, within BT0671 at 829.073 kb on + strand, within BT0671 at 829.080 kb on + strand, within BT0671 at 829.124 kb on + strand, within BT0671 at 829.565 kb on + strand, within BT0671 at 829.566 kb on - strand, within BT0671
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1B;Mouse4 remove 824,747 - BT0669 0.23 +0.8 824,827 - BT0669 0.30 -1.1 824,847 + BT0669 0.32 -1.2 824,949 + BT0669 0.41 +0.5 825,014 - BT0669 0.47 -1.3 825,014 - BT0669 0.47 -2.1 825,080 - BT0669 0.53 +0.3 825,098 - BT0669 0.55 -0.3 825,098 - BT0669 0.55 -2.5 825,101 - BT0669 0.55 +0.8 825,175 + BT0669 0.62 -1.9 825,195 - BT0669 0.64 -1.2 825,225 + BT0669 0.67 +1.4 825,283 - -1.5 825,403 - BT0669 0.83 -0.8 825,438 - BT0669 0.86 -0.5 825,526 + +0.4 825,593 - -1.6 825,613 - -1.8 825,691 + +0.1 825,730 - -1.2 825,741 + +0.5 825,765 + -0.5 825,843 + -0.6 825,896 - -1.2 825,942 - BT0670 0.11 -1.3 825,958 + BT0670 0.11 -0.0 826,024 + BT0670 0.13 -1.4 826,057 + BT0670 0.14 -1.1 826,057 + BT0670 0.14 -0.5 826,060 - BT0670 0.14 -0.1 826,309 + BT0670 0.22 -0.7 826,314 + BT0670 0.23 -0.1 826,314 + BT0670 0.23 +1.1 826,394 + BT0670 0.25 -0.2 826,421 + BT0670 0.26 +0.1 826,509 + BT0670 0.29 -0.4 826,553 + BT0670 0.30 -1.9 826,950 + BT0670 0.43 -1.2 826,951 - -0.8 826,987 - BT0670 0.44 +1.2 827,143 - BT0670 0.49 -0.2 827,225 + BT0670 0.52 +0.4 827,276 + BT0670 0.54 -1.2 827,277 - BT0670 0.54 +0.0 827,405 + BT0670 0.58 -0.1 827,406 - BT0670 0.58 -1.3 827,514 + BT0670 0.61 +0.5 828,062 - BT0670 0.79 +0.8 828,345 + BT0670 0.88 -1.6 828,396 - BT0670 0.90 +1.2 828,663 + +1.8 828,664 - -3.0 828,778 + -0.2 828,781 - +1.5 828,871 - BT0671 0.10 -1.2 829,021 - BT0671 0.20 +1.6 829,073 + BT0671 0.24 +1.7 829,080 + BT0671 0.24 -0.5 829,124 + BT0671 0.27 -1.5 829,565 + BT0671 0.57 -1.6 829,566 - BT0671 0.57 +1.2
Or see this region's nucleotide sequence