Experiment: Post-colonization (Day 2) - Cage1B;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0556 and BT0557 are separated by 9 nucleotides BT0557 and BT0558 are separated by 255 nucleotides
BT0556: BT0556 - carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file), at 689,074 to 690,240
BT0556
BT0557: BT0557 - carbamyl phosphate synthetase (NCBI ptt file), at 690,250 to 693,477
BT0557
BT0558: BT0558 - mannose-1-phosphate guanylyltransferase (NCBI ptt file), at 693,733 to 694,785
BT0558
Position (kb) 690
691
692
693
694 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 689.490 kb on + strand, within BT0556 at 689.566 kb on + strand, within BT0556 at 689.595 kb on - strand, within BT0556 at 689.623 kb on + strand, within BT0556 at 689.646 kb on + strand, within BT0556 at 689.872 kb on - strand, within BT0556 at 689.975 kb on - strand, within BT0556 at 690.436 kb on + strand at 690.457 kb on + strand at 690.464 kb on + strand at 690.501 kb on + strand at 690.501 kb on + strand at 690.501 kb on + strand at 690.502 kb on - strand at 690.553 kb on - strand at 690.582 kb on - strand, within BT0557 at 690.594 kb on + strand, within BT0557 at 690.603 kb on - strand, within BT0557 at 690.613 kb on - strand, within BT0557 at 690.978 kb on + strand, within BT0557 at 690.978 kb on + strand, within BT0557 at 690.979 kb on - strand, within BT0557 at 691.023 kb on + strand, within BT0557 at 691.048 kb on - strand, within BT0557 at 691.085 kb on + strand, within BT0557 at 691.298 kb on + strand, within BT0557 at 691.299 kb on - strand, within BT0557 at 691.299 kb on - strand, within BT0557 at 691.340 kb on + strand, within BT0557 at 691.414 kb on - strand, within BT0557 at 691.558 kb on + strand, within BT0557 at 691.623 kb on + strand, within BT0557 at 691.623 kb on + strand, within BT0557 at 691.786 kb on + strand, within BT0557 at 691.842 kb on + strand, within BT0557 at 691.843 kb on - strand, within BT0557 at 691.882 kb on + strand, within BT0557 at 691.891 kb on + strand, within BT0557 at 691.914 kb on - strand, within BT0557 at 691.933 kb on - strand, within BT0557 at 692.077 kb on - strand, within BT0557 at 692.175 kb on - strand, within BT0557 at 692.356 kb on - strand, within BT0557 at 692.507 kb on + strand, within BT0557 at 692.510 kb on + strand, within BT0557 at 692.510 kb on + strand, within BT0557 at 692.541 kb on - strand, within BT0557 at 692.577 kb on - strand, within BT0557 at 692.615 kb on + strand, within BT0557 at 692.615 kb on + strand, within BT0557 at 692.616 kb on - strand, within BT0557 at 692.923 kb on - strand, within BT0557 at 692.982 kb on + strand, within BT0557 at 693.006 kb on + strand, within BT0557 at 693.066 kb on + strand, within BT0557 at 693.094 kb on - strand, within BT0557 at 693.100 kb on - strand, within BT0557 at 693.138 kb on + strand, within BT0557 at 693.157 kb on + strand at 693.216 kb on + strand at 693.276 kb on + strand at 693.343 kb on - strand at 693.445 kb on - strand at 693.471 kb on + strand at 693.476 kb on - strand at 693.578 kb on - strand at 693.578 kb on - strand at 693.608 kb on + strand at 693.608 kb on + strand at 693.631 kb on - strand at 693.750 kb on + strand at 693.831 kb on - strand at 693.831 kb on - strand at 693.927 kb on + strand, within BT0558 at 693.931 kb on + strand, within BT0558 at 694.018 kb on + strand, within BT0558 at 694.018 kb on + strand, within BT0558 at 694.204 kb on + strand, within BT0558 at 694.207 kb on - strand, within BT0558 at 694.315 kb on + strand, within BT0558 at 694.315 kb on + strand, within BT0558 at 694.357 kb on - strand, within BT0558 at 694.376 kb on + strand, within BT0558 at 694.427 kb on - strand, within BT0558
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage1B;Mouse4 remove 689,490 + BT0556 0.36 -4.3 689,566 + BT0556 0.42 -4.0 689,595 - BT0556 0.45 -1.9 689,623 + BT0556 0.47 -3.7 689,646 + BT0556 0.49 -0.9 689,872 - BT0556 0.68 -0.9 689,975 - BT0556 0.77 -0.3 690,436 + -0.9 690,457 + -1.1 690,464 + -1.3 690,501 + -0.6 690,501 + -3.9 690,501 + -1.4 690,502 - -1.3 690,553 - -2.7 690,582 - BT0557 0.10 -5.9 690,594 + BT0557 0.11 -1.1 690,603 - BT0557 0.11 -1.5 690,613 - BT0557 0.11 +1.7 690,978 + BT0557 0.23 -1.5 690,978 + BT0557 0.23 -2.4 690,979 - BT0557 0.23 -1.3 691,023 + BT0557 0.24 -3.7 691,048 - BT0557 0.25 -4.7 691,085 + BT0557 0.26 -1.5 691,298 + BT0557 0.32 -4.2 691,299 - BT0557 0.32 -4.0 691,299 - BT0557 0.32 -1.7 691,340 + BT0557 0.34 -2.5 691,414 - BT0557 0.36 -1.9 691,558 + BT0557 0.41 -3.7 691,623 + BT0557 0.43 -1.5 691,623 + BT0557 0.43 -1.6 691,786 + BT0557 0.48 -0.6 691,842 + BT0557 0.49 -2.3 691,843 - BT0557 0.49 -3.7 691,882 + BT0557 0.51 -1.5 691,891 + BT0557 0.51 -0.3 691,914 - BT0557 0.52 -2.4 691,933 - BT0557 0.52 -0.9 692,077 - BT0557 0.57 -1.6 692,175 - BT0557 0.60 -1.1 692,356 - BT0557 0.65 -3.4 692,507 + BT0557 0.70 -2.9 692,510 + BT0557 0.70 +1.7 692,510 + BT0557 0.70 -3.1 692,541 - BT0557 0.71 -1.9 692,577 - BT0557 0.72 -1.3 692,615 + BT0557 0.73 -2.5 692,615 + BT0557 0.73 -4.2 692,616 - BT0557 0.73 -1.2 692,923 - BT0557 0.83 -2.8 692,982 + BT0557 0.85 -4.4 693,006 + BT0557 0.85 -2.3 693,066 + BT0557 0.87 -0.9 693,094 - BT0557 0.88 -3.8 693,100 - BT0557 0.88 -1.3 693,138 + BT0557 0.89 -3.8 693,157 + -3.1 693,216 + -1.1 693,276 + -4.0 693,343 - -0.9 693,445 - -1.1 693,471 + -1.1 693,476 - +0.4 693,578 - -1.8 693,578 - -0.7 693,608 + -0.3 693,608 + -0.9 693,631 - -0.3 693,750 + -0.6 693,831 - -0.9 693,831 - +0.4 693,927 + BT0558 0.18 -0.3 693,931 + BT0558 0.19 -0.7 694,018 + BT0558 0.27 -1.6 694,018 + BT0558 0.27 -0.3 694,204 + BT0558 0.45 -1.0 694,207 - BT0558 0.45 -0.7 694,315 + BT0558 0.55 -0.5 694,315 + BT0558 0.55 -1.2 694,357 - BT0558 0.59 -0.6 694,376 + BT0558 0.61 -0.4 694,427 - BT0558 0.66 -0.5
Or see this region's nucleotide sequence