Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1597

Experiment: MoYLS4 with furfural 0.0625%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with furfural 0.0625%
1,679,318	+				-0.1
1,679,374	-	cheB-1	DVU1596	0.15	+0.4
1,679,405	+	cheB-1	DVU1596	0.18	+0.0
1,679,413	-	cheB-1	DVU1596	0.19	-0.1
1,679,459	+	cheB-1	DVU1596	0.23	-0.3
1,679,492	+	cheB-1	DVU1596	0.26	-0.6
1,679,493	+	cheB-1	DVU1596	0.26	+0.0
1,679,529	+	cheB-1	DVU1596	0.30	-1.3
1,679,583	-	cheB-1	DVU1596	0.35	+0.0
1,679,624	+	cheB-1	DVU1596	0.38	-0.2
1,679,634	+	cheB-1	DVU1596	0.39	-0.4
1,679,634	-	cheB-1	DVU1596	0.39	-0.2
1,679,634	-	cheB-1	DVU1596	0.39	-0.5
1,679,694	+	cheB-1	DVU1596	0.45	-0.0
1,679,825	-	cheB-1	DVU1596	0.57	-0.6
1,679,830	+	cheB-1	DVU1596	0.58	-1.0
1,679,840	-	cheB-1	DVU1596	0.58	-0.2
1,679,930	-	cheB-1	DVU1596	0.67	+0.0
1,679,953	-	cheB-1	DVU1596	0.69	-0.5
1,679,988	+	cheB-1	DVU1596	0.72	+0.2
1,680,042	-	cheB-1	DVU1596	0.77	-0.6
1,680,067	-	cheB-1	DVU1596	0.80	-0.0
1,680,087	+	cheB-1	DVU1596	0.81	+0.7
1,680,162	+	cheB-1	DVU1596	0.88	+0.2
1,680,162	+	cheB-1	DVU1596	0.88	-1.0
1,680,181	+				-0.2
1,680,361	-				+0.0
1,680,363	+				-0.0
1,680,363	+				-1.6
1,680,370	+				+0.5
1,680,422	+	sir	DVU1597	0.17	-2.3
1,680,555	-	sir	DVU1597	0.37	+0.5
1,680,589	-	sir	DVU1597	0.43	-0.3
1,680,700	+	sir	DVU1597	0.60	-0.5
1,680,825	+	sir	DVU1597	0.79	-1.7
1,680,845	-	sir	DVU1597	0.82	-1.5
1,680,870	-	sir	DVU1597	0.85	+0.1
1,680,959	-				-2.2
1,681,017	+				-0.1
1,681,023	-				-0.0
1,681,137	+				+0.1
1,681,140	-				-1.4
1,681,145	-				-0.1
1,681,252	+				+0.1
1,681,265	-				-0.2
1,681,323	+				-0.7
1,681,353	-				-0.2
1,681,366	+				-0.1
1,681,386	+				+0.5
1,681,394	-				-0.1
1,681,434	+		DVU1598	0.21	-0.1
1,681,465	+		DVU1598	0.30	-0.3
1,681,473	-		DVU1598	0.32	-0.1
1,681,495	+		DVU1598	0.39	+0.0
1,681,620	+		DVU1598	0.75	+0.4
1,681,620	+		DVU1598	0.75	-0.3
1,681,630	+		DVU1598	0.78	-0.7
1,681,675	+				-1.4
1,681,688	+				-0.0
1,681,819	+	crcB	DVU1599	0.18	-1.4
1,681,827	-	crcB	DVU1599	0.21	+0.3
1,681,866	+	crcB	DVU1599	0.31	+1.2