Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2838

Experiment: MoYLS4 with furfural 0.0625%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2837 and DVU2838 are separated by 71 nucleotidesDVU2838 and DVU2839 are separated by 0 nucleotidesDVU2839 and DVU2840 are separated by 108 nucleotides DVU2837: DVU2837 - conserved hypothetical protein (TIGR), at 2,941,168 to 2,942,241 DVU2837 DVU2838: DVU2838 - conserved hypothetical protein (TIGR), at 2,942,313 to 2,943,650 DVU2838 DVU2839: DVU2839 - conserved hypothetical protein (TIGR), at 2,943,651 to 2,944,175 DVU2839 DVU2840: DVU2840 - conserved hypothetical protein (TIGR), at 2,944,284 to 2,944,985 DVU2840 Position (kb) 2942 2943 2944Strain fitness (log2 ratio) -1 0 1 2at 2941.357 kb on + strand, within DVU2837at 2941.418 kb on + strand, within DVU2837at 2941.542 kb on + strand, within DVU2837at 2941.550 kb on - strand, within DVU2837at 2941.550 kb on - strand, within DVU2837at 2941.550 kb on - strand, within DVU2837at 2941.615 kb on - strand, within DVU2837at 2941.615 kb on - strand, within DVU2837at 2941.656 kb on + strand, within DVU2837at 2941.704 kb on + strand, within DVU2837at 2941.767 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.784 kb on - strand, within DVU2837at 2941.784 kb on - strand, within DVU2837at 2941.810 kb on - strand, within DVU2837at 2941.820 kb on - strand, within DVU2837at 2941.831 kb on - strand, within DVU2837at 2941.892 kb on - strand, within DVU2837at 2941.892 kb on - strand, within DVU2837at 2941.923 kb on + strand, within DVU2837at 2941.923 kb on + strand, within DVU2837at 2942.084 kb on - strand, within DVU2837at 2942.414 kb on - strandat 2942.929 kb on + strand, within DVU2838at 2943.142 kb on + strand, within DVU2838at 2943.218 kb on + strand, within DVU2838at 2943.218 kb on + strand, within DVU2838at 2943.226 kb on - strand, within DVU2838at 2943.278 kb on + strand, within DVU2838at 2943.286 kb on - strand, within DVU2838at 2943.307 kb on + strand, within DVU2838at 2943.529 kb on - strandat 2943.595 kb on - strandat 2943.709 kb on + strand, within DVU2839at 2943.988 kb on + strand, within DVU2839at 2944.091 kb on + strand, within DVU2839at 2944.112 kb on + strand, within DVU2839

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with furfural 0.0625%
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2,941,357 + DVU2837 0.18 +0.5
2,941,418 + DVU2837 0.23 +0.9
2,941,542 + DVU2837 0.35 +0.8
2,941,550 - DVU2837 0.36 -0.5
2,941,550 - DVU2837 0.36 -0.4
2,941,550 - DVU2837 0.36 +0.3
2,941,615 - DVU2837 0.42 -0.7
2,941,615 - DVU2837 0.42 -0.1
2,941,656 + DVU2837 0.45 -0.1
2,941,704 + DVU2837 0.50 -1.6
2,941,767 + DVU2837 0.56 +0.1
2,941,776 + DVU2837 0.57 -0.4
2,941,776 + DVU2837 0.57 -1.4
2,941,776 + DVU2837 0.57 -0.6
2,941,776 + DVU2837 0.57 -0.6
2,941,784 - DVU2837 0.57 -0.0
2,941,784 - DVU2837 0.57 +0.1
2,941,810 - DVU2837 0.60 +0.3
2,941,820 - DVU2837 0.61 -0.6
2,941,831 - DVU2837 0.62 +0.0
2,941,892 - DVU2837 0.67 -0.5
2,941,892 - DVU2837 0.67 -0.7
2,941,923 + DVU2837 0.70 +0.1
2,941,923 + DVU2837 0.70 -0.5
2,942,084 - DVU2837 0.85 -1.1
2,942,414 - +2.1
2,942,929 + DVU2838 0.46 -0.7
2,943,142 + DVU2838 0.62 -1.2
2,943,218 + DVU2838 0.68 +0.1
2,943,218 + DVU2838 0.68 -0.2
2,943,226 - DVU2838 0.68 -0.5
2,943,278 + DVU2838 0.72 -0.3
2,943,286 - DVU2838 0.73 -0.2
2,943,307 + DVU2838 0.74 -1.1
2,943,529 - -0.5
2,943,595 - +0.3
2,943,709 + DVU2839 0.11 -0.1
2,943,988 + DVU2839 0.64 -1.3
2,944,091 + DVU2839 0.84 -0.5
2,944,112 + DVU2839 0.88 +0.2

Or see this region's nucleotide sequence