Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF11999

Experiment: MoYLS4 with Cobalt Chloride 250uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF35977 and tRNA-Arg are separated by 114 nucleotidestRNA-Arg and tRNA-Arg are separated by 19 nucleotidestRNA-Arg and tRNA-Arg are separated by 32 nucleotidestRNA-Arg and DORF11999 are separated by 47 nucleotidesDORF11999 and cysD are separated by 76 nucleotidescysD and DVU1567 are separated by 9 nucleotides DORF35977: DORF35977 - no description, at 1,647,759 to 1,648,106 DORF35977 DVU_tRNA-Arg-1: tRNA-Arg - tRNA with anticodon ACG for Arg (VIMSS-AUTO), at 1,648,221 to 1,648,297 tRNA-Arg DVU_tRNA-Arg-2: tRNA-Arg - tRNA with anticodon ACG for Arg (VIMSS-AUTO), at 1,648,317 to 1,648,393 tRNA-Arg DVU_tRNA-Arg-3: tRNA-Arg - tRNA with anticodon ACG for Arg (VIMSS-AUTO), at 1,648,426 to 1,648,502 tRNA-Arg DORF11999: DORF11999 - SEED: FIG00606676: hypothetical protein, at 1,648,550 to 1,648,987 DORF11999 DVU1566: cysD - phosphoadenosine phosphosulfate reductase, putative (TIGR), at 1,649,064 to 1,649,738 cysD DVU1567: DVU1567 - hypothetical protein (TIGR), at 1,649,748 to 1,649,960 DVU1567 Position (kb) 1648 1649Strain fitness (log2 ratio) -1 0 1at 1647.575 kb on - strandat 1647.909 kb on + strand, within DORF35977at 1647.917 kb on - strand, within DORF35977at 1647.981 kb on - strand, within DORF35977at 1648.038 kb on - strand, within DORF35977at 1648.258 kb on - strand, within tRNA-Argat 1648.258 kb on - strand, within tRNA-Argat 1648.758 kb on - strand, within DORF11999at 1648.853 kb on - strand, within DORF11999at 1648.853 kb on - strand, within DORF11999at 1648.855 kb on + strand, within DORF11999at 1648.871 kb on + strand, within DORF11999at 1648.893 kb on + strand, within DORF11999at 1649.111 kb on - strandat 1649.150 kb on + strand, within cysDat 1649.196 kb on - strand, within cysDat 1649.196 kb on - strand, within cysDat 1649.298 kb on + strand, within cysDat 1649.306 kb on - strand, within cysDat 1649.344 kb on + strand, within cysDat 1649.356 kb on - strand, within cysDat 1649.361 kb on - strand, within cysDat 1649.471 kb on + strand, within cysDat 1649.471 kb on + strand, within cysDat 1649.615 kb on + strand, within cysDat 1649.632 kb on + strand, within cysDat 1649.639 kb on + strand, within cysDat 1649.639 kb on + strand, within cysDat 1649.640 kb on + strand, within cysDat 1649.650 kb on + strand, within cysDat 1649.745 kb on + strandat 1649.745 kb on + strandat 1649.747 kb on + strandat 1649.753 kb on - strandat 1649.769 kb on - strandat 1649.883 kb on + strand, within DVU1567at 1649.978 kb on - strandat 1649.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cobalt Chloride 250uM
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1,647,575 - +0.2
1,647,909 + DORF35977 0.43 +0.3
1,647,917 - DORF35977 0.45 +0.3
1,647,981 - DORF35977 0.64 +0.2
1,648,038 - DORF35977 0.80 -0.1
1,648,258 - tRNA-Arg DVU_tRNA-Arg-1 0.48 +0.9
1,648,258 - tRNA-Arg DVU_tRNA-Arg-1 0.48 -0.2
1,648,758 - DORF11999 0.47 -0.4
1,648,853 - DORF11999 0.69 -0.8
1,648,853 - DORF11999 0.69 -0.3
1,648,855 + DORF11999 0.70 -1.2
1,648,871 + DORF11999 0.73 -0.3
1,648,893 + DORF11999 0.78 +0.6
1,649,111 - +0.7
1,649,150 + cysD DVU1566 0.13 +0.5
1,649,196 - cysD DVU1566 0.20 -0.3
1,649,196 - cysD DVU1566 0.20 +0.0
1,649,298 + cysD DVU1566 0.35 +1.2
1,649,306 - cysD DVU1566 0.36 -0.7
1,649,344 + cysD DVU1566 0.41 +0.6
1,649,356 - cysD DVU1566 0.43 -0.1
1,649,361 - cysD DVU1566 0.44 -0.1
1,649,471 + cysD DVU1566 0.60 -0.3
1,649,471 + cysD DVU1566 0.60 -0.8
1,649,615 + cysD DVU1566 0.82 -0.4
1,649,632 + cysD DVU1566 0.84 -0.5
1,649,639 + cysD DVU1566 0.85 +1.3
1,649,639 + cysD DVU1566 0.85 -0.3
1,649,640 + cysD DVU1566 0.85 +0.1
1,649,650 + cysD DVU1566 0.87 -0.2
1,649,745 + -0.1
1,649,745 + -0.1
1,649,747 + +0.2
1,649,753 - -0.1
1,649,769 - -0.5
1,649,883 + DVU1567 0.63 -0.0
1,649,978 - -0.2
1,649,978 - +0.8

Or see this region's nucleotide sequence