Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF10862

Experiment: MoYLS4 with Cobalt Chloride 250uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1380 and DVU1381 overlap by 20 nucleotidesDVU1381 and DVU1382 are separated by 60 nucleotidesDVU1382 and DORF10862 are separated by 89 nucleotidesDORF10862 and pyrR are separated by 145 nucleotides DVU1380: DVU1380 - hypothetical protein (TIGR), at 1,455,113 to 1,455,343 DVU1380 DVU1381: DVU1381 - hypothetical protein (TIGR), at 1,455,324 to 1,455,539 DVU1381 DVU1382: DVU1382 - HesB family selenoprotein (TIGR), at 1,455,600 to 1,455,923 DVU1382 DORF10862: DORF10862 - SEED: HesB-like domain, at 1,456,013 to 1,456,315 DORF10862 DVU1384: pyrR - pyrimidine operon regulatory protein (TIGR), at 1,456,461 to 1,456,997 pyrR Position (kb) 1456 1457Strain fitness (log2 ratio) -2 -1 0 1at 1455.031 kb on + strandat 1455.066 kb on + strandat 1455.094 kb on + strandat 1455.101 kb on + strandat 1455.134 kb on - strandat 1455.205 kb on - strand, within DVU1380at 1455.246 kb on + strand, within DVU1380at 1455.305 kb on + strand, within DVU1380at 1455.930 kb on - strandat 1456.167 kb on - strand, within DORF10862at 1456.204 kb on + strand, within DORF10862at 1456.402 kb on + strandat 1456.416 kb on + strandat 1456.436 kb on - strandat 1456.448 kb on - strandat 1456.469 kb on - strandat 1456.526 kb on + strand, within pyrRat 1456.539 kb on + strand, within pyrRat 1456.636 kb on - strand, within pyrRat 1456.716 kb on - strand, within pyrRat 1456.735 kb on + strand, within pyrRat 1457.097 kb on + strandat 1457.105 kb on - strandat 1457.105 kb on - strandat 1457.188 kb on - strandat 1457.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cobalt Chloride 250uM
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1,455,031 + -0.3
1,455,066 + +0.1
1,455,094 + -1.1
1,455,101 + -0.1
1,455,134 - -0.6
1,455,205 - DVU1380 0.40 -0.1
1,455,246 + DVU1380 0.58 -1.1
1,455,305 + DVU1380 0.83 -0.5
1,455,930 - +0.7
1,456,167 - DORF10862 0.51 -0.9
1,456,204 + DORF10862 0.63 -0.5
1,456,402 + -0.1
1,456,416 + -1.2
1,456,436 - +0.3
1,456,448 - -0.3
1,456,469 - -0.3
1,456,526 + pyrR DVU1384 0.12 -0.7
1,456,539 + pyrR DVU1384 0.15 -0.9
1,456,636 - pyrR DVU1384 0.33 +0.0
1,456,716 - pyrR DVU1384 0.47 +0.1
1,456,735 + pyrR DVU1384 0.51 +0.4
1,457,097 + -1.8
1,457,105 - -0.8
1,457,105 - -0.3
1,457,188 - -1.4
1,457,304 + -0.8

Or see this region's nucleotide sequence