Experiment: MoYLS4 with Cobalt Chloride 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt coxB and DVU1813 are separated by 9 nucleotides DVU1813 and DVU1814 are separated by 8 nucleotides DVU1814 and DVU1815 are separated by 10 nucleotides
DVU1812: coxB - cytochrome c oxidase, subunit II, putative (TIGR), at 1,876,687 to 1,877,967
coxB
DVU1813: DVU1813 - hypothetical protein (TIGR), at 1,877,977 to 1,878,270
DVU1813
DVU1814: DVU1814 - cytochrome c oxidase, subunit III, putative (TIGR), at 1,878,279 to 1,878,890
DVU1814
DVU1815: DVU1815 - cytochrome c oxidase, subunit I, putative (TIGR), at 1,878,901 to 1,880,526
DVU1815
Position (kb)
1878
1879 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1877.348 kb on + strand, within coxB at 1877.489 kb on + strand, within coxB at 1877.499 kb on + strand, within coxB at 1877.514 kb on - strand, within coxB at 1877.549 kb on + strand, within coxB at 1877.663 kb on + strand, within coxB at 1877.769 kb on - strand, within coxB at 1877.787 kb on - strand, within coxB at 1877.858 kb on + strand at 1877.866 kb on - strand at 1877.866 kb on - strand at 1877.866 kb on - strand at 1877.983 kb on - strand at 1878.064 kb on + strand, within DVU1813 at 1878.104 kb on - strand, within DVU1813 at 1878.239 kb on - strand, within DVU1813 at 1878.241 kb on - strand at 1878.265 kb on + strand at 1878.523 kb on - strand, within DVU1814 at 1878.671 kb on + strand, within DVU1814 at 1878.711 kb on + strand, within DVU1814 at 1878.717 kb on - strand, within DVU1814 at 1878.717 kb on - strand, within DVU1814 at 1878.859 kb on + strand at 1878.871 kb on - strand at 1878.967 kb on + strand at 1879.133 kb on + strand, within DVU1815 at 1879.141 kb on - strand, within DVU1815 at 1879.141 kb on - strand, within DVU1815 at 1879.153 kb on + strand, within DVU1815 at 1879.162 kb on - strand, within DVU1815 at 1879.402 kb on + strand, within DVU1815 at 1879.470 kb on - strand, within DVU1815 at 1879.560 kb on - strand, within DVU1815 at 1879.562 kb on + strand, within DVU1815 at 1879.577 kb on + strand, within DVU1815 at 1879.664 kb on - strand, within DVU1815 at 1879.669 kb on - strand, within DVU1815 at 1879.774 kb on - strand, within DVU1815 at 1879.829 kb on - strand, within DVU1815 at 1879.855 kb on - strand, within DVU1815 at 1879.885 kb on - strand, within DVU1815 at 1879.885 kb on - strand, within DVU1815
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cobalt Chloride 100uM remove 1,877,348 + coxB DVU1812 0.52 -0.4 1,877,489 + coxB DVU1812 0.63 -0.7 1,877,499 + coxB DVU1812 0.63 -2.0 1,877,514 - coxB DVU1812 0.65 -0.2 1,877,549 + coxB DVU1812 0.67 +2.1 1,877,663 + coxB DVU1812 0.76 -0.2 1,877,769 - coxB DVU1812 0.84 +0.2 1,877,787 - coxB DVU1812 0.86 -0.1 1,877,858 + -0.1 1,877,866 - -0.1 1,877,866 - -0.2 1,877,866 - -0.5 1,877,983 - +0.4 1,878,064 + DVU1813 0.30 -0.1 1,878,104 - DVU1813 0.43 -0.2 1,878,239 - DVU1813 0.89 -0.4 1,878,241 - -0.4 1,878,265 + -0.0 1,878,523 - DVU1814 0.40 +0.1 1,878,671 + DVU1814 0.64 +1.5 1,878,711 + DVU1814 0.71 +0.2 1,878,717 - DVU1814 0.72 +1.5 1,878,717 - DVU1814 0.72 -0.1 1,878,859 + -1.5 1,878,871 - -0.0 1,878,967 + -0.6 1,879,133 + DVU1815 0.14 +0.6 1,879,141 - DVU1815 0.15 +0.0 1,879,141 - DVU1815 0.15 +0.6 1,879,153 + DVU1815 0.15 +0.2 1,879,162 - DVU1815 0.16 +0.5 1,879,402 + DVU1815 0.31 +0.0 1,879,470 - DVU1815 0.35 -1.2 1,879,560 - DVU1815 0.41 +0.2 1,879,562 + DVU1815 0.41 -0.7 1,879,577 + DVU1815 0.42 -1.2 1,879,664 - DVU1815 0.47 +0.3 1,879,669 - DVU1815 0.47 -0.1 1,879,774 - DVU1815 0.54 -1.4 1,879,829 - DVU1815 0.57 -0.1 1,879,855 - DVU1815 0.59 -0.5 1,879,885 - DVU1815 0.61 -0.1 1,879,885 - DVU1815 0.61 +0.0
Or see this region's nucleotide sequence