Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0098

Experiment: MoYLS4 with Cobalt Chloride 20uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpotC and potB are separated by 2 nucleotidespotB and potA overlap by 14 nucleotidespotA and DVU0099 are separated by 417 nucleotides DVU0096: potC - polyamine ABC transporter, permease protein (TIGR), at 126,716 to 127,489 potC DVU0097: potB - polyamine ABC transporter, permease protein (TIGR), at 127,492 to 128,379 potB DVU0098: potA - polyamine ABC transporter, ATP-binding protein (TIGR), at 128,366 to 129,472 potA DVU0099: DVU0099 - TonB domain protein (TIGR), at 129,890 to 131,050 DVU0099 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 127.387 kb on + strand, within potCat 127.395 kb on - strand, within potCat 127.417 kb on + strandat 127.425 kb on - strandat 127.426 kb on - strandat 127.450 kb on - strandat 127.451 kb on - strandat 127.453 kb on + strandat 127.461 kb on - strandat 127.520 kb on - strandat 127.539 kb on - strandat 127.574 kb on + strandat 127.582 kb on - strand, within potBat 127.830 kb on - strand, within potBat 127.850 kb on - strand, within potBat 127.889 kb on + strand, within potBat 127.913 kb on + strand, within potBat 127.993 kb on - strand, within potBat 128.120 kb on + strand, within potBat 128.125 kb on + strand, within potBat 128.125 kb on + strand, within potBat 128.222 kb on + strand, within potBat 128.262 kb on - strand, within potBat 128.300 kb on + strandat 128.363 kb on + strandat 128.516 kb on + strand, within potAat 128.529 kb on + strand, within potAat 128.531 kb on + strand, within potAat 128.537 kb on - strand, within potAat 128.537 kb on - strand, within potAat 128.539 kb on - strand, within potAat 128.539 kb on - strand, within potAat 128.587 kb on + strand, within potAat 128.608 kb on + strand, within potAat 128.616 kb on - strand, within potAat 128.636 kb on - strand, within potAat 128.643 kb on - strand, within potAat 128.679 kb on - strand, within potAat 128.687 kb on + strand, within potAat 128.710 kb on - strand, within potAat 128.772 kb on + strand, within potAat 128.772 kb on + strand, within potAat 128.819 kb on - strand, within potAat 128.905 kb on - strand, within potAat 128.905 kb on - strand, within potAat 128.942 kb on - strand, within potAat 128.969 kb on - strand, within potAat 128.981 kb on - strand, within potAat 128.983 kb on - strand, within potAat 129.011 kb on + strand, within potAat 129.051 kb on - strand, within potAat 129.251 kb on + strand, within potAat 129.322 kb on + strand, within potAat 129.351 kb on + strand, within potAat 129.426 kb on - strandat 129.445 kb on + strandat 129.512 kb on - strandat 129.683 kb on + strandat 129.744 kb on - strandat 129.747 kb on + strandat 129.769 kb on + strandat 129.816 kb on + strandat 129.940 kb on - strandat 129.988 kb on - strandat 130.043 kb on - strand, within DVU0099at 130.069 kb on + strand, within DVU0099at 130.115 kb on - strand, within DVU0099at 130.172 kb on + strand, within DVU0099at 130.177 kb on + strand, within DVU0099at 130.177 kb on + strand, within DVU0099at 130.184 kb on + strand, within DVU0099at 130.229 kb on + strand, within DVU0099at 130.237 kb on - strand, within DVU0099at 130.237 kb on - strand, within DVU0099at 130.239 kb on + strand, within DVU0099at 130.239 kb on + strand, within DVU0099at 130.247 kb on - strand, within DVU0099at 130.366 kb on - strand, within DVU0099

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cobalt Chloride 20uM
remove
127,387 + potC DVU0096 0.87 -0.5
127,395 - potC DVU0096 0.88 -0.3
127,417 + -0.2
127,425 - -0.5
127,426 - -0.5
127,450 - -1.0
127,451 - -0.4
127,453 + -0.2
127,461 - -0.4
127,520 - +1.5
127,539 - -0.5
127,574 + -0.7
127,582 - potB DVU0097 0.10 -0.3
127,830 - potB DVU0097 0.38 -0.5
127,850 - potB DVU0097 0.40 +0.0
127,889 + potB DVU0097 0.45 +0.0
127,913 + potB DVU0097 0.47 +0.0
127,993 - potB DVU0097 0.56 +1.2
128,120 + potB DVU0097 0.71 +1.3
128,125 + potB DVU0097 0.71 -0.6
128,125 + potB DVU0097 0.71 +0.0
128,222 + potB DVU0097 0.82 +0.6
128,262 - potB DVU0097 0.87 -0.4
128,300 + -0.0
128,363 + +0.8
128,516 + potA DVU0098 0.14 -0.8
128,529 + potA DVU0098 0.15 -0.9
128,531 + potA DVU0098 0.15 +0.0
128,537 - potA DVU0098 0.15 -0.3
128,537 - potA DVU0098 0.15 -0.3
128,539 - potA DVU0098 0.16 -0.7
128,539 - potA DVU0098 0.16 -1.6
128,587 + potA DVU0098 0.20 -0.4
128,608 + potA DVU0098 0.22 -0.8
128,616 - potA DVU0098 0.23 +0.8
128,636 - potA DVU0098 0.24 -0.5
128,643 - potA DVU0098 0.25 -0.4
128,679 - potA DVU0098 0.28 -1.6
128,687 + potA DVU0098 0.29 -0.2
128,710 - potA DVU0098 0.31 -0.7
128,772 + potA DVU0098 0.37 -1.4
128,772 + potA DVU0098 0.37 -1.5
128,819 - potA DVU0098 0.41 -1.8
128,905 - potA DVU0098 0.49 +0.3
128,905 - potA DVU0098 0.49 -0.2
128,942 - potA DVU0098 0.52 -1.1
128,969 - potA DVU0098 0.54 -0.2
128,981 - potA DVU0098 0.56 +0.1
128,983 - potA DVU0098 0.56 -0.2
129,011 + potA DVU0098 0.58 -1.4
129,051 - potA DVU0098 0.62 -0.7
129,251 + potA DVU0098 0.80 -0.2
129,322 + potA DVU0098 0.86 -0.3
129,351 + potA DVU0098 0.89 -1.1
129,426 - -0.4
129,445 + -0.6
129,512 - +0.6
129,683 + -0.3
129,744 - -0.3
129,747 + +0.2
129,769 + +0.4
129,816 + +0.3
129,940 - -0.4
129,988 - -0.2
130,043 - DVU0099 0.13 -0.6
130,069 + DVU0099 0.15 -0.5
130,115 - DVU0099 0.19 -0.2
130,172 + DVU0099 0.24 -0.7
130,177 + DVU0099 0.25 +0.8
130,177 + DVU0099 0.25 +2.0
130,184 + DVU0099 0.25 +0.7
130,229 + DVU0099 0.29 -0.1
130,237 - DVU0099 0.30 +0.3
130,237 - DVU0099 0.30 +0.1
130,239 + DVU0099 0.30 +0.1
130,239 + DVU0099 0.30 -0.5
130,247 - DVU0099 0.31 -0.6
130,366 - DVU0099 0.41 -0.2

Or see this region's nucleotide sequence