Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0022

Experiment: MoYLS4 with Cobalt Chloride 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0021 and DVU0022 are separated by 267 nucleotidesDVU0022 and DVU0024 are separated by 229 nucleotidesDVU0024 and DVU0025 are separated by 75 nucleotides DVU0021: DVU0021 - conserved domain protein (TIGR), at 23,612 to 24,589 DVU0021 DVU0022: DVU0022 - HAMP domain/GGDEF domain/EAL domain protein (TIGR), at 24,857 to 27,238 DVU0022 DVU0024: DVU0024 - conserved hypothetical protein (TIGR), at 27,468 to 27,638 DVU0024 DVU0025: DVU0025 - sensory box histidine kinase (TIGR), at 27,714 to 29,873 DVU0025 Position (kb) 24 25 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 23.873 kb on - strand, within DVU0021at 23.969 kb on - strand, within DVU0021at 23.993 kb on + strand, within DVU0021at 24.030 kb on - strand, within DVU0021at 24.087 kb on + strand, within DVU0021at 24.087 kb on - strand, within DVU0021at 24.136 kb on - strand, within DVU0021at 24.142 kb on - strand, within DVU0021at 24.143 kb on + strand, within DVU0021at 24.148 kb on + strand, within DVU0021at 24.210 kb on + strand, within DVU0021at 24.239 kb on - strand, within DVU0021at 24.260 kb on + strand, within DVU0021at 24.266 kb on + strand, within DVU0021at 24.274 kb on - strand, within DVU0021at 24.274 kb on - strand, within DVU0021at 24.274 kb on - strand, within DVU0021at 24.276 kb on + strand, within DVU0021at 24.297 kb on + strand, within DVU0021at 24.304 kb on + strand, within DVU0021at 24.311 kb on - strand, within DVU0021at 24.328 kb on + strand, within DVU0021at 24.417 kb on + strand, within DVU0021at 24.417 kb on + strand, within DVU0021at 24.478 kb on + strand, within DVU0021at 24.478 kb on + strand, within DVU0021at 24.478 kb on + strand, within DVU0021at 24.478 kb on + strand, within DVU0021at 24.486 kb on - strand, within DVU0021at 24.511 kb on - strandat 24.539 kb on - strandat 24.600 kb on - strandat 24.604 kb on - strandat 24.647 kb on + strandat 24.660 kb on + strandat 24.668 kb on - strandat 24.708 kb on - strandat 24.731 kb on - strandat 24.752 kb on - strandat 24.817 kb on - strandat 24.846 kb on - strandat 24.872 kb on + strandat 24.935 kb on + strandat 24.962 kb on + strandat 24.970 kb on - strandat 24.996 kb on + strandat 25.051 kb on - strandat 25.065 kb on + strandat 25.102 kb on + strand, within DVU0022at 25.140 kb on + strand, within DVU0022at 25.149 kb on - strand, within DVU0022at 25.171 kb on - strand, within DVU0022at 25.229 kb on + strand, within DVU0022at 25.249 kb on + strand, within DVU0022at 25.265 kb on + strand, within DVU0022at 25.272 kb on - strand, within DVU0022at 25.409 kb on + strand, within DVU0022at 25.412 kb on - strand, within DVU0022at 25.417 kb on - strand, within DVU0022at 25.431 kb on + strand, within DVU0022at 25.439 kb on - strand, within DVU0022at 25.477 kb on + strand, within DVU0022at 25.506 kb on + strand, within DVU0022at 25.533 kb on - strand, within DVU0022at 25.540 kb on - strand, within DVU0022at 25.564 kb on + strand, within DVU0022at 25.564 kb on - strand, within DVU0022at 25.582 kb on - strand, within DVU0022at 25.612 kb on - strand, within DVU0022at 25.616 kb on - strand, within DVU0022at 25.617 kb on - strand, within DVU0022at 25.622 kb on - strand, within DVU0022at 25.675 kb on + strand, within DVU0022at 25.707 kb on + strand, within DVU0022at 25.732 kb on + strand, within DVU0022at 25.732 kb on + strand, within DVU0022at 25.740 kb on - strand, within DVU0022at 25.740 kb on - strand, within DVU0022at 25.740 kb on - strand, within DVU0022at 25.740 kb on - strand, within DVU0022at 25.742 kb on + strand, within DVU0022at 25.774 kb on - strand, within DVU0022at 25.797 kb on + strand, within DVU0022at 25.842 kb on - strand, within DVU0022at 25.887 kb on - strand, within DVU0022at 25.887 kb on - strand, within DVU0022at 25.959 kb on - strand, within DVU0022at 26.025 kb on + strand, within DVU0022at 26.030 kb on + strand, within DVU0022at 26.102 kb on + strand, within DVU0022at 26.110 kb on + strand, within DVU0022at 26.110 kb on + strand, within DVU0022at 26.141 kb on + strand, within DVU0022at 26.220 kb on + strand, within DVU0022at 26.225 kb on + strand, within DVU0022at 26.225 kb on + strand, within DVU0022at 26.225 kb on + strand, within DVU0022at 26.225 kb on + strand, within DVU0022at 26.225 kb on + strand, within DVU0022at 26.225 kb on + strand, within DVU0022at 26.226 kb on - strand, within DVU0022at 26.228 kb on - strand, within DVU0022at 26.231 kb on + strand, within DVU0022at 26.233 kb on - strand, within DVU0022at 26.233 kb on - strand, within DVU0022at 26.233 kb on - strand, within DVU0022at 26.233 kb on - strand, within DVU0022at 26.242 kb on + strand, within DVU0022at 26.257 kb on - strand, within DVU0022at 26.318 kb on + strand, within DVU0022at 26.337 kb on + strand, within DVU0022at 26.348 kb on - strand, within DVU0022at 26.401 kb on + strand, within DVU0022at 26.403 kb on + strand, within DVU0022at 26.427 kb on - strand, within DVU0022at 26.458 kb on + strand, within DVU0022at 26.458 kb on + strand, within DVU0022at 26.461 kb on - strand, within DVU0022at 26.466 kb on - strand, within DVU0022at 26.552 kb on - strand, within DVU0022at 26.577 kb on + strand, within DVU0022at 26.590 kb on + strand, within DVU0022at 26.613 kb on + strand, within DVU0022at 26.613 kb on + strand, within DVU0022at 26.618 kb on + strand, within DVU0022at 26.625 kb on + strand, within DVU0022at 26.677 kb on + strand, within DVU0022at 26.698 kb on + strand, within DVU0022at 26.698 kb on + strand, within DVU0022at 26.703 kb on + strand, within DVU0022at 26.711 kb on - strand, within DVU0022at 26.716 kb on - strand, within DVU0022at 26.735 kb on + strand, within DVU0022at 26.743 kb on - strand, within DVU0022at 26.754 kb on + strand, within DVU0022at 26.806 kb on - strand, within DVU0022at 26.811 kb on - strand, within DVU0022at 26.847 kb on + strand, within DVU0022at 26.852 kb on + strand, within DVU0022at 26.905 kb on - strand, within DVU0022at 26.954 kb on - strand, within DVU0022at 26.988 kb on + strand, within DVU0022at 26.988 kb on + strand, within DVU0022at 27.026 kb on + strandat 27.070 kb on + strandat 27.078 kb on - strandat 27.105 kb on + strandat 27.129 kb on - strandat 27.145 kb on - strandat 27.147 kb on + strandat 27.150 kb on - strandat 27.270 kb on + strandat 27.270 kb on + strandat 27.278 kb on - strandat 27.278 kb on - strandat 27.288 kb on - strandat 27.372 kb on - strandat 27.481 kb on - strandat 27.598 kb on + strand, within DVU0024at 27.632 kb on + strandat 27.673 kb on - strandat 27.673 kb on - strandat 27.719 kb on - strandat 27.723 kb on + strandat 27.727 kb on + strandat 27.760 kb on - strandat 27.765 kb on + strandat 27.777 kb on - strandat 27.870 kb on + strandat 27.956 kb on + strand, within DVU0025at 27.958 kb on + strand, within DVU0025at 27.968 kb on + strand, within DVU0025at 28.023 kb on - strand, within DVU0025at 28.042 kb on + strand, within DVU0025at 28.060 kb on - strand, within DVU0025at 28.143 kb on + strand, within DVU0025at 28.162 kb on + strand, within DVU0025at 28.187 kb on + strand, within DVU0025at 28.232 kb on - strand, within DVU0025

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cobalt Chloride 20uM
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23,873 - DVU0021 0.27 -0.1
23,969 - DVU0021 0.37 -0.3
23,993 + DVU0021 0.39 +0.1
24,030 - DVU0021 0.43 -0.9
24,087 + DVU0021 0.49 +0.3
24,087 - DVU0021 0.49 -0.7
24,136 - DVU0021 0.54 +0.1
24,142 - DVU0021 0.54 -0.3
24,143 + DVU0021 0.54 +0.0
24,148 + DVU0021 0.55 +1.0
24,210 + DVU0021 0.61 +0.1
24,239 - DVU0021 0.64 -0.7
24,260 + DVU0021 0.66 -0.3
24,266 + DVU0021 0.67 -0.6
24,274 - DVU0021 0.68 +0.0
24,274 - DVU0021 0.68 +0.5
24,274 - DVU0021 0.68 -0.0
24,276 + DVU0021 0.68 -1.0
24,297 + DVU0021 0.70 +0.0
24,304 + DVU0021 0.71 -0.6
24,311 - DVU0021 0.71 -0.3
24,328 + DVU0021 0.73 -1.1
24,417 + DVU0021 0.82 +0.1
24,417 + DVU0021 0.82 -0.3
24,478 + DVU0021 0.89 -1.1
24,478 + DVU0021 0.89 +0.8
24,478 + DVU0021 0.89 +0.2
24,478 + DVU0021 0.89 -0.7
24,486 - DVU0021 0.89 -0.5
24,511 - -0.0
24,539 - +0.7
24,600 - -0.2
24,604 - -0.2
24,647 + -0.3
24,660 + -1.1
24,668 - +1.8
24,708 - -0.1
24,731 - +0.1
24,752 - -0.2
24,817 - -0.2
24,846 - -0.8
24,872 + +0.0
24,935 + +0.8
24,962 + -0.3
24,970 - +0.5
24,996 + -0.4
25,051 - -0.4
25,065 + -0.6
25,102 + DVU0022 0.10 -0.8
25,140 + DVU0022 0.12 -0.6
25,149 - DVU0022 0.12 +0.3
25,171 - DVU0022 0.13 +0.1
25,229 + DVU0022 0.16 +0.4
25,249 + DVU0022 0.16 -0.4
25,265 + DVU0022 0.17 +0.9
25,272 - DVU0022 0.17 -0.3
25,409 + DVU0022 0.23 -0.5
25,412 - DVU0022 0.23 -0.5
25,417 - DVU0022 0.24 -1.0
25,431 + DVU0022 0.24 +1.2
25,439 - DVU0022 0.24 -0.0
25,477 + DVU0022 0.26 -0.2
25,506 + DVU0022 0.27 -0.1
25,533 - DVU0022 0.28 -0.2
25,540 - DVU0022 0.29 +0.3
25,564 + DVU0022 0.30 -1.2
25,564 - DVU0022 0.30 -0.1
25,582 - DVU0022 0.30 -1.5
25,612 - DVU0022 0.32 +0.3
25,616 - DVU0022 0.32 -0.1
25,617 - DVU0022 0.32 -0.9
25,622 - DVU0022 0.32 +0.8
25,675 + DVU0022 0.34 +0.0
25,707 + DVU0022 0.36 -0.7
25,732 + DVU0022 0.37 -0.9
25,732 + DVU0022 0.37 +0.2
25,740 - DVU0022 0.37 +0.2
25,740 - DVU0022 0.37 +0.8
25,740 - DVU0022 0.37 -0.3
25,740 - DVU0022 0.37 +0.8
25,742 + DVU0022 0.37 -0.5
25,774 - DVU0022 0.38 -0.7
25,797 + DVU0022 0.39 +1.3
25,842 - DVU0022 0.41 -0.4
25,887 - DVU0022 0.43 -1.1
25,887 - DVU0022 0.43 +0.0
25,959 - DVU0022 0.46 +1.5
26,025 + DVU0022 0.49 -0.7
26,030 + DVU0022 0.49 -1.6
26,102 + DVU0022 0.52 +0.2
26,110 + DVU0022 0.53 +1.2
26,110 + DVU0022 0.53 +0.1
26,141 + DVU0022 0.54 +0.4
26,220 + DVU0022 0.57 -0.1
26,225 + DVU0022 0.57 -0.7
26,225 + DVU0022 0.57 -0.2
26,225 + DVU0022 0.57 -0.1
26,225 + DVU0022 0.57 +0.2
26,225 + DVU0022 0.57 +1.8
26,225 + DVU0022 0.57 -0.4
26,226 - DVU0022 0.57 +1.3
26,228 - DVU0022 0.58 +1.2
26,231 + DVU0022 0.58 +0.3
26,233 - DVU0022 0.58 +0.5
26,233 - DVU0022 0.58 +0.9
26,233 - DVU0022 0.58 +0.0
26,233 - DVU0022 0.58 -0.5
26,242 + DVU0022 0.58 -0.2
26,257 - DVU0022 0.59 +0.3
26,318 + DVU0022 0.61 -0.9
26,337 + DVU0022 0.62 -0.8
26,348 - DVU0022 0.63 +0.4
26,401 + DVU0022 0.65 -1.1
26,403 + DVU0022 0.65 +0.1
26,427 - DVU0022 0.66 -1.4
26,458 + DVU0022 0.67 -0.3
26,458 + DVU0022 0.67 +1.1
26,461 - DVU0022 0.67 -0.3
26,466 - DVU0022 0.68 -0.8
26,552 - DVU0022 0.71 -1.5
26,577 + DVU0022 0.72 +0.3
26,590 + DVU0022 0.73 +1.3
26,613 + DVU0022 0.74 -0.2
26,613 + DVU0022 0.74 +0.0
26,618 + DVU0022 0.74 +1.3
26,625 + DVU0022 0.74 -0.2
26,677 + DVU0022 0.76 -0.7
26,698 + DVU0022 0.77 +0.8
26,698 + DVU0022 0.77 -0.1
26,703 + DVU0022 0.77 -0.0
26,711 - DVU0022 0.78 +1.3
26,716 - DVU0022 0.78 +0.5
26,735 + DVU0022 0.79 -1.4
26,743 - DVU0022 0.79 +1.5
26,754 + DVU0022 0.80 -0.3
26,806 - DVU0022 0.82 -0.0
26,811 - DVU0022 0.82 -0.3
26,847 + DVU0022 0.84 +0.0
26,852 + DVU0022 0.84 +0.8
26,905 - DVU0022 0.86 -0.2
26,954 - DVU0022 0.88 -0.5
26,988 + DVU0022 0.89 +0.7
26,988 + DVU0022 0.89 +1.0
27,026 + -0.6
27,070 + -0.4
27,078 - -0.8
27,105 + -0.0
27,129 - +0.3
27,145 - -0.0
27,147 + +0.4
27,150 - -0.5
27,270 + +0.5
27,270 + -0.1
27,278 - -0.1
27,278 - +0.0
27,288 - -0.3
27,372 - -0.1
27,481 - -2.3
27,598 + DVU0024 0.76 -0.1
27,632 + -0.3
27,673 - -1.3
27,673 - -0.6
27,719 - +0.5
27,723 + -0.5
27,727 + +0.3
27,760 - +0.0
27,765 + +1.1
27,777 - -0.4
27,870 + +1.3
27,956 + DVU0025 0.11 -0.7
27,958 + DVU0025 0.11 +0.2
27,968 + DVU0025 0.12 +0.0
28,023 - DVU0025 0.14 +0.3
28,042 + DVU0025 0.15 +0.3
28,060 - DVU0025 0.16 -0.4
28,143 + DVU0025 0.20 -0.5
28,162 + DVU0025 0.21 -0.5
28,187 + DVU0025 0.22 -0.3
28,232 - DVU0025 0.24 -1.3

Or see this region's nucleotide sequence