Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0060

Experiment: MoYLS4 with Cobalt Chloride 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0059 and DVUA0060 are separated by 138 nucleotidesDVUA0060 and DVUA0061 overlap by 4 nucleotides DVUA0059: DVUA0059 - conserved hypothetical protein (TIGR), at 72,938 to 74,314 DVUA0059 DVUA0060: DVUA0060 - membrane protein, putative (TIGR), at 74,453 to 75,838 DVUA0060 DVUA0061: DVUA0061 - membrane protein, putative (TIGR), at 75,835 to 77,187 DVUA0061 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 73.467 kb on + strand, within DVUA0059at 73.510 kb on - strand, within DVUA0059at 73.535 kb on + strand, within DVUA0059at 73.548 kb on - strand, within DVUA0059at 73.679 kb on + strand, within DVUA0059at 73.680 kb on - strand, within DVUA0059at 73.680 kb on - strand, within DVUA0059at 73.689 kb on + strand, within DVUA0059at 73.689 kb on + strand, within DVUA0059at 73.692 kb on - strand, within DVUA0059at 73.697 kb on - strand, within DVUA0059at 73.697 kb on - strand, within DVUA0059at 73.699 kb on + strand, within DVUA0059at 73.851 kb on + strand, within DVUA0059at 73.864 kb on - strand, within DVUA0059at 73.891 kb on - strand, within DVUA0059at 73.911 kb on + strand, within DVUA0059at 73.965 kb on - strand, within DVUA0059at 74.167 kb on + strand, within DVUA0059at 74.175 kb on - strand, within DVUA0059at 74.232 kb on - strandat 74.284 kb on - strandat 74.321 kb on - strandat 74.372 kb on - strandat 74.418 kb on + strandat 74.586 kb on + strandat 74.596 kb on + strand, within DVUA0060at 74.615 kb on + strand, within DVUA0060at 74.682 kb on - strand, within DVUA0060at 74.682 kb on - strand, within DVUA0060at 74.701 kb on + strand, within DVUA0060at 74.701 kb on + strand, within DVUA0060at 74.759 kb on + strand, within DVUA0060at 74.759 kb on + strand, within DVUA0060at 74.759 kb on + strand, within DVUA0060at 74.767 kb on - strand, within DVUA0060at 74.767 kb on - strand, within DVUA0060at 74.774 kb on + strand, within DVUA0060at 74.825 kb on - strand, within DVUA0060at 74.877 kb on - strand, within DVUA0060at 74.898 kb on + strand, within DVUA0060at 74.917 kb on + strand, within DVUA0060at 74.934 kb on - strand, within DVUA0060at 74.980 kb on - strand, within DVUA0060at 75.017 kb on - strand, within DVUA0060at 75.195 kb on - strand, within DVUA0060at 75.217 kb on + strand, within DVUA0060at 75.217 kb on + strand, within DVUA0060at 75.225 kb on - strand, within DVUA0060at 75.225 kb on - strand, within DVUA0060at 75.225 kb on - strand, within DVUA0060at 75.263 kb on + strand, within DVUA0060at 75.301 kb on + strand, within DVUA0060at 75.325 kb on - strand, within DVUA0060at 75.504 kb on - strand, within DVUA0060at 75.606 kb on + strand, within DVUA0060at 75.630 kb on + strand, within DVUA0060at 75.700 kb on + strandat 75.764 kb on + strandat 75.840 kb on - strandat 75.841 kb on - strandat 75.846 kb on + strandat 75.847 kb on + strandat 75.918 kb on + strandat 75.954 kb on + strandat 75.962 kb on - strandat 76.018 kb on - strand, within DVUA0061at 76.059 kb on - strand, within DVUA0061at 76.115 kb on + strand, within DVUA0061at 76.275 kb on - strand, within DVUA0061at 76.295 kb on + strand, within DVUA0061at 76.318 kb on - strand, within DVUA0061at 76.322 kb on + strand, within DVUA0061at 76.382 kb on - strand, within DVUA0061at 76.423 kb on - strand, within DVUA0061at 76.458 kb on - strand, within DVUA0061at 76.554 kb on + strand, within DVUA0061at 76.597 kb on - strand, within DVUA0061at 76.607 kb on - strand, within DVUA0061at 76.637 kb on + strand, within DVUA0061at 76.637 kb on + strand, within DVUA0061at 76.645 kb on - strand, within DVUA0061at 76.661 kb on + strand, within DVUA0061at 76.661 kb on + strand, within DVUA0061at 76.661 kb on + strand, within DVUA0061at 76.732 kb on + strand, within DVUA0061at 76.740 kb on - strand, within DVUA0061at 76.740 kb on - strand, within DVUA0061at 76.740 kb on - strand, within DVUA0061at 76.745 kb on - strand, within DVUA0061

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cobalt Chloride 20uM
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73,467 + DVUA0059 0.38 -1.0
73,510 - DVUA0059 0.42 -0.9
73,535 + DVUA0059 0.43 -0.3
73,548 - DVUA0059 0.44 -0.9
73,679 + DVUA0059 0.54 -0.9
73,680 - DVUA0059 0.54 +0.1
73,680 - DVUA0059 0.54 -0.3
73,689 + DVUA0059 0.55 -0.3
73,689 + DVUA0059 0.55 -0.6
73,692 - DVUA0059 0.55 +2.1
73,697 - DVUA0059 0.55 -0.5
73,697 - DVUA0059 0.55 +1.9
73,699 + DVUA0059 0.55 -0.2
73,851 + DVUA0059 0.66 -0.2
73,864 - DVUA0059 0.67 -0.7
73,891 - DVUA0059 0.69 -0.2
73,911 + DVUA0059 0.71 +0.9
73,965 - DVUA0059 0.75 +0.1
74,167 + DVUA0059 0.89 -0.8
74,175 - DVUA0059 0.90 -0.2
74,232 - +0.4
74,284 - +0.2
74,321 - +1.7
74,372 - -0.1
74,418 + +0.1
74,586 + -0.3
74,596 + DVUA0060 0.10 -0.2
74,615 + DVUA0060 0.12 +0.6
74,682 - DVUA0060 0.17 -0.2
74,682 - DVUA0060 0.17 -1.2
74,701 + DVUA0060 0.18 +0.7
74,701 + DVUA0060 0.18 +0.0
74,759 + DVUA0060 0.22 +0.7
74,759 + DVUA0060 0.22 +0.9
74,759 + DVUA0060 0.22 -0.1
74,767 - DVUA0060 0.23 +0.4
74,767 - DVUA0060 0.23 -0.4
74,774 + DVUA0060 0.23 +0.5
74,825 - DVUA0060 0.27 -0.7
74,877 - DVUA0060 0.31 -0.8
74,898 + DVUA0060 0.32 -0.4
74,917 + DVUA0060 0.33 +0.4
74,934 - DVUA0060 0.35 +1.4
74,980 - DVUA0060 0.38 +1.3
75,017 - DVUA0060 0.41 +0.6
75,195 - DVUA0060 0.54 -0.6
75,217 + DVUA0060 0.55 -0.2
75,217 + DVUA0060 0.55 +0.7
75,225 - DVUA0060 0.56 +0.9
75,225 - DVUA0060 0.56 -0.0
75,225 - DVUA0060 0.56 +0.4
75,263 + DVUA0060 0.58 -0.2
75,301 + DVUA0060 0.61 -0.1
75,325 - DVUA0060 0.63 -0.5
75,504 - DVUA0060 0.76 -0.1
75,606 + DVUA0060 0.83 +0.2
75,630 + DVUA0060 0.85 -0.3
75,700 + -0.6
75,764 + +0.1
75,840 - -0.1
75,841 - -0.3
75,846 + -1.3
75,847 + +0.1
75,918 + -0.3
75,954 + -1.9
75,962 - +1.6
76,018 - DVUA0061 0.14 +0.1
76,059 - DVUA0061 0.17 -0.2
76,115 + DVUA0061 0.21 -0.3
76,275 - DVUA0061 0.33 -0.8
76,295 + DVUA0061 0.34 -0.3
76,318 - DVUA0061 0.36 -0.2
76,322 + DVUA0061 0.36 -0.5
76,382 - DVUA0061 0.40 +0.6
76,423 - DVUA0061 0.43 -0.0
76,458 - DVUA0061 0.46 +1.2
76,554 + DVUA0061 0.53 -0.1
76,597 - DVUA0061 0.56 +0.9
76,607 - DVUA0061 0.57 -0.2
76,637 + DVUA0061 0.59 -0.3
76,637 + DVUA0061 0.59 -1.5
76,645 - DVUA0061 0.60 -0.4
76,661 + DVUA0061 0.61 +0.0
76,661 + DVUA0061 0.61 +1.9
76,661 + DVUA0061 0.61 +1.3
76,732 + DVUA0061 0.66 -0.6
76,740 - DVUA0061 0.67 +0.1
76,740 - DVUA0061 0.67 -0.3
76,740 - DVUA0061 0.67 -0.5
76,745 - DVUA0061 0.67 -0.5

Or see this region's nucleotide sequence