Experiment: Post-colonization (Day 4) - Cage1A;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0764 and BT0765 are separated by 11 nucleotides BT0765 and BT0766 are separated by 151 nucleotides
BT0764: BT0764 - hypothetical protein (NCBI ptt file), at 953,934 to 955,268
BT0764
BT0765: BT0765 - putative protease (NCBI ptt file), at 955,280 to 956,362
BT0765
BT0766: BT0766 - conserved hypothetical protein (NCBI ptt file), at 956,514 to 957,317
BT0766
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 954.346 kb on + strand, within BT0764 at 954.348 kb on + strand, within BT0764 at 954.349 kb on - strand, within BT0764 at 954.352 kb on - strand, within BT0764 at 954.352 kb on - strand, within BT0764 at 954.383 kb on + strand, within BT0764 at 954.387 kb on + strand, within BT0764 at 954.388 kb on - strand, within BT0764 at 954.388 kb on - strand, within BT0764 at 954.408 kb on - strand, within BT0764 at 954.430 kb on - strand, within BT0764 at 954.475 kb on + strand, within BT0764 at 954.476 kb on - strand, within BT0764 at 954.509 kb on + strand, within BT0764 at 954.509 kb on + strand, within BT0764 at 954.509 kb on + strand, within BT0764 at 954.510 kb on - strand, within BT0764 at 954.829 kb on - strand, within BT0764 at 954.939 kb on - strand, within BT0764 at 955.023 kb on - strand, within BT0764 at 955.100 kb on + strand, within BT0764 at 955.202 kb on + strand at 955.224 kb on - strand at 955.245 kb on - strand at 955.291 kb on + strand at 955.295 kb on + strand at 955.387 kb on - strand at 955.389 kb on + strand, within BT0765 at 955.588 kb on + strand, within BT0765 at 955.652 kb on + strand, within BT0765 at 955.763 kb on - strand, within BT0765 at 955.849 kb on + strand, within BT0765 at 955.853 kb on - strand, within BT0765 at 956.052 kb on + strand, within BT0765 at 956.052 kb on + strand, within BT0765 at 956.056 kb on + strand, within BT0765 at 956.056 kb on + strand, within BT0765 at 956.057 kb on - strand, within BT0765 at 956.066 kb on + strand, within BT0765 at 956.104 kb on + strand, within BT0765 at 956.141 kb on + strand, within BT0765 at 956.218 kb on + strand at 956.228 kb on - strand, within BT0765 at 956.314 kb on + strand at 956.339 kb on + strand at 956.371 kb on + strand at 956.371 kb on + strand at 956.371 kb on + strand at 956.371 kb on + strand at 956.405 kb on - strand at 956.471 kb on + strand at 956.482 kb on - strand at 956.541 kb on + strand at 956.542 kb on - strand at 956.577 kb on - strand at 956.583 kb on - strand at 956.619 kb on - strand, within BT0766 at 956.728 kb on - strand, within BT0766 at 956.777 kb on + strand, within BT0766 at 956.858 kb on + strand, within BT0766 at 956.894 kb on + strand, within BT0766 at 956.914 kb on - strand, within BT0766 at 956.922 kb on - strand, within BT0766 at 956.958 kb on - strand, within BT0766 at 956.969 kb on + strand, within BT0766 at 956.970 kb on - strand, within BT0766 at 957.002 kb on + strand, within BT0766 at 957.081 kb on + strand, within BT0766 at 957.082 kb on - strand, within BT0766 at 957.183 kb on + strand, within BT0766 at 957.183 kb on + strand, within BT0766 at 957.249 kb on - strand at 957.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1A;Mouse2 remove 954,346 + BT0764 0.31 -2.8 954,348 + BT0764 0.31 +0.9 954,349 - BT0764 0.31 -0.5 954,352 - BT0764 0.31 -0.6 954,352 - BT0764 0.31 -1.6 954,383 + BT0764 0.34 -1.7 954,387 + BT0764 0.34 -0.8 954,388 - BT0764 0.34 -1.8 954,388 - BT0764 0.34 -0.9 954,408 - BT0764 0.36 -1.1 954,430 - BT0764 0.37 -0.9 954,475 + BT0764 0.41 +0.3 954,476 - BT0764 0.41 -1.7 954,509 + BT0764 0.43 +0.8 954,509 + BT0764 0.43 -1.8 954,509 + BT0764 0.43 +0.3 954,510 - BT0764 0.43 -0.6 954,829 - BT0764 0.67 -1.7 954,939 - BT0764 0.75 -3.7 955,023 - BT0764 0.82 -1.4 955,100 + BT0764 0.87 -0.6 955,202 + -2.2 955,224 - -0.7 955,245 - +0.8 955,291 + -0.6 955,295 + +0.2 955,387 - +0.2 955,389 + BT0765 0.10 -0.7 955,588 + BT0765 0.28 -0.6 955,652 + BT0765 0.34 -2.3 955,763 - BT0765 0.45 -1.4 955,849 + BT0765 0.53 -2.0 955,853 - BT0765 0.53 -0.8 956,052 + BT0765 0.71 -0.8 956,052 + BT0765 0.71 -0.7 956,056 + BT0765 0.72 -1.6 956,056 + BT0765 0.72 +0.4 956,057 - BT0765 0.72 -0.6 956,066 + BT0765 0.73 -1.3 956,104 + BT0765 0.76 -1.4 956,141 + BT0765 0.80 -1.6 956,218 + +1.3 956,228 - BT0765 0.88 -2.6 956,314 + +0.3 956,339 + +1.1 956,371 + -0.4 956,371 + +0.9 956,371 + -1.4 956,371 + +0.1 956,405 - -0.8 956,471 + +1.2 956,482 - -2.5 956,541 + -1.6 956,542 - -1.7 956,577 - +1.0 956,583 - -0.6 956,619 - BT0766 0.13 -1.0 956,728 - BT0766 0.27 +0.2 956,777 + BT0766 0.33 -2.5 956,858 + BT0766 0.43 -0.1 956,894 + BT0766 0.47 -0.2 956,914 - BT0766 0.50 -0.3 956,922 - BT0766 0.51 +0.5 956,958 - BT0766 0.55 -1.8 956,969 + BT0766 0.57 -1.6 956,970 - BT0766 0.57 -1.7 957,002 + BT0766 0.61 -2.4 957,081 + BT0766 0.71 -2.8 957,082 - BT0766 0.71 -2.2 957,183 + BT0766 0.83 -1.7 957,183 + BT0766 0.83 -1.2 957,249 - -0.8 957,284 + -1.0
Or see this region's nucleotide sequence