Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0780

Experiment: MoYLS4 with Cobalt Chloride 20uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntatpH and atpF2 overlap by 4 nucleotidesatpF2 and atpF1 are separated by 72 nucleotidesatpF1 and DVU0784 are separated by 797 nucleotides DVU0778: atpH - ATP synthase, F1 delta subunit (TIGR), at 868,641 to 869,192 atpH DVU0779: atpF2 - ATP synthase F0, B subunit, putative (TIGR), at 869,189 to 869,719 atpF2 DVU0780: atpF1 - ATP synthase F0, B subunit, putative (TIGR), at 869,792 to 870,187 atpF1 DVU0784: DVU0784 - conserved hypothetical protein (TIGR), at 870,985 to 871,332 DVU0784 Position (kb) 869 870 871Strain fitness (log2 ratio) -1 0 1 2at 869.795 kb on + strandat 870.577 kb on - strandat 870.622 kb on - strandat 870.648 kb on - strandat 870.649 kb on + strandat 870.657 kb on - strandat 870.823 kb on - strandat 870.982 kb on + strandat 870.982 kb on + strandat 871.006 kb on + strandat 871.015 kb on + strandat 871.148 kb on - strand, within DVU0784

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cobalt Chloride 20uM
remove
869,795 + +0.0
870,577 - +0.6
870,622 - +0.1
870,648 - +0.2
870,649 + -0.5
870,657 - -0.3
870,823 - +0.1
870,982 + +0.0
870,982 + +0.8
871,006 + -0.6
871,015 + +1.8
871,148 - DVU0784 0.47 -0.5

Or see this region's nucleotide sequence