Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1785

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1784 and DVU1785 are separated by 203 nucleotidesDVU1785 and DVU1786 are separated by 559 nucleotides DVU1784: DVU1784 - oxidoreductase, short-chain dehydrogenase/reductase family (TIGR), at 1,846,930 to 1,847,691 DVU1784 DVU1785: DVU1785 - membrane protein, MarC family (TIGR), at 1,847,895 to 1,848,497 DVU1785 DVU1786: DVU1786 - GGDEF domain protein (TIGR), at 1,849,057 to 1,850,115 DVU1786 Position (kb) 1847 1848 1849Strain fitness (log2 ratio) -3 -2 -1 0 1at 1846.914 kb on + strandat 1846.929 kb on - strandat 1846.930 kb on + strandat 1846.938 kb on - strandat 1847.079 kb on - strand, within DVU1784at 1847.099 kb on - strand, within DVU1784at 1847.109 kb on + strand, within DVU1784at 1847.142 kb on + strand, within DVU1784at 1847.256 kb on + strand, within DVU1784at 1847.276 kb on + strand, within DVU1784at 1847.394 kb on - strand, within DVU1784at 1847.428 kb on + strand, within DVU1784at 1847.433 kb on + strand, within DVU1784at 1847.543 kb on - strand, within DVU1784at 1847.657 kb on - strandat 1847.722 kb on + strandat 1847.807 kb on + strandat 1847.959 kb on + strand, within DVU1785at 1847.990 kb on - strand, within DVU1785at 1848.130 kb on + strand, within DVU1785at 1848.164 kb on - strand, within DVU1785at 1848.220 kb on - strand, within DVU1785at 1848.300 kb on + strand, within DVU1785at 1848.368 kb on - strand, within DVU1785at 1848.426 kb on - strand, within DVU1785at 1848.475 kb on - strandat 1848.505 kb on - strandat 1848.553 kb on - strandat 1848.654 kb on + strandat 1848.662 kb on - strandat 1848.671 kb on + strandat 1848.679 kb on - strandat 1848.749 kb on + strandat 1848.757 kb on - strandat 1848.800 kb on + strandat 1848.826 kb on + strandat 1848.907 kb on - strandat 1849.137 kb on + strandat 1849.172 kb on - strand, within DVU1786at 1849.205 kb on + strand, within DVU1786at 1849.205 kb on + strand, within DVU1786at 1849.259 kb on + strand, within DVU1786at 1849.304 kb on - strand, within DVU1786at 1849.408 kb on + strand, within DVU1786at 1849.427 kb on + strand, within DVU1786

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,846,914 + -0.5
1,846,929 - +0.7
1,846,930 + +0.1
1,846,938 - -0.8
1,847,079 - DVU1784 0.20 -0.7
1,847,099 - DVU1784 0.22 -0.8
1,847,109 + DVU1784 0.23 +0.0
1,847,142 + DVU1784 0.28 +0.8
1,847,256 + DVU1784 0.43 -0.2
1,847,276 + DVU1784 0.45 -0.2
1,847,394 - DVU1784 0.61 -1.1
1,847,428 + DVU1784 0.65 -0.2
1,847,433 + DVU1784 0.66 -1.1
1,847,543 - DVU1784 0.80 -3.6
1,847,657 - -2.0
1,847,722 + +0.2
1,847,807 + -1.6
1,847,959 + DVU1785 0.11 -1.3
1,847,990 - DVU1785 0.16 -0.5
1,848,130 + DVU1785 0.39 +0.8
1,848,164 - DVU1785 0.45 -1.2
1,848,220 - DVU1785 0.54 -1.8
1,848,300 + DVU1785 0.67 -0.8
1,848,368 - DVU1785 0.78 -2.1
1,848,426 - DVU1785 0.88 -0.7
1,848,475 - -0.2
1,848,505 - +0.2
1,848,553 - -1.1
1,848,654 + -0.8
1,848,662 - -0.0
1,848,671 + -1.7
1,848,679 - -0.6
1,848,749 + +0.2
1,848,757 - -1.8
1,848,800 + +0.1
1,848,826 + -0.1
1,848,907 - +0.1
1,849,137 + +0.8
1,849,172 - DVU1786 0.11 -0.2
1,849,205 + DVU1786 0.14 -0.4
1,849,205 + DVU1786 0.14 -1.5
1,849,259 + DVU1786 0.19 -1.4
1,849,304 - DVU1786 0.23 +1.4
1,849,408 + DVU1786 0.33 +1.3
1,849,427 + DVU1786 0.35 -1.2

Or see this region's nucleotide sequence