Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0134

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0132 and DVUA0133 are separated by 1 nucleotidesDVUA0133 and cas1 overlap by 17 nucleotidescas1 and DVUA0135 overlap by 14 nucleotidesDVUA0135 and 11427099 are separated by 178 nucleotides11427099 and 11569462 overlap by 32 nucleotides11569462 and 11711854 overlap by 32 nucleotides11711854 and 11427100 are separated by 0 nucleotides11427100 and 11569463 overlap by 33 nucleotides11569463 and 11711855 overlap by 33 nucleotides11711855 and 11427101 are separated by 0 nucleotides11427101 and 11569464 overlap by 32 nucleotides11569464 and 11711856 overlap by 32 nucleotides11711856 and 11427102 are separated by 0 nucleotides11427102 and 11569465 overlap by 35 nucleotides11569465 and 11711857 overlap by 35 nucleotides11711857 and 11427103 are separated by 0 nucleotides11427103 and 11569466 overlap by 32 nucleotides11569466 and 11711858 overlap by 32 nucleotides11711858 and 11427104 are separated by 0 nucleotides11427104 and 11569467 overlap by 36 nucleotides11569467 and 11711859 overlap by 36 nucleotides11711859 and 11427105 are separated by 0 nucleotides11427105 and 11569468 overlap by 32 nucleotides11569468 and 11711860 overlap by 32 nucleotides11711860 and 11427106 are separated by 0 nucleotides11427106 and 11569469 overlap by 33 nucleotides11569469 and 11711861 overlap by 33 nucleotides11711861 and 11427107 are separated by 0 nucleotides11427107 and 11569470 overlap by 32 nucleotides11569470 and 11711862 overlap by 32 nucleotides11711862 and 11427108 are separated by 0 nucleotides11427108 and 11569471 overlap by 34 nucleotides11569471 and 11711863 overlap by 34 nucleotides11711863 and 11427109 are separated by 0 nucleotides11427109 and 11569472 overlap by 32 nucleotides11569472 and 11711864 overlap by 32 nucleotides11711864 and 11427110 are separated by 0 nucleotides11427110 and 11569473 overlap by 32 nucleotides11569473 and 11711865 overlap by 32 nucleotides11711865 and 11427111 are separated by 0 nucleotides11427111 and 11569474 overlap by 32 nucleotides11569474 and 11711866 overlap by 32 nucleotides11711866 and 11427112 are separated by 0 nucleotides11427112 and 11569475 overlap by 34 nucleotides11569475 and 11711867 overlap by 34 nucleotides11711867 and 11427113 are separated by 0 nucleotides11427113 and 11569476 overlap by 32 nucleotides11569476 and 11711868 overlap by 32 nucleotides11711868 and 11427114 are separated by 0 nucleotides11427114 and 11569477 overlap by 35 nucleotides11569477 and 11711869 overlap by 35 nucleotides DVUA0132: DVUA0132 - CRISPR-associated protein, TM1801 family (TIGR), at 172,897 to 173,769 DVUA0132 DVUA0133: DVUA0133 - CRISPR-associated protein Cas4 (TIGR), at 173,771 to 174,409 DVUA0133 DVUA0134: cas1 - CRISPR-associated protein Cas1 (TIGR), at 174,393 to 175,424 cas1 DVUA0135: DVUA0135 - CRISPR-associated protein Cas2 (TIGR), at 175,411 to 175,719 DVUA0135 11427099 - no description, at 175,898 to 175,929 11427099 11569462 - no description, at 175,898 to 175,929 11569462 11711854 - no description, at 175,898 to 175,929 11711854 11427100 - no description, at 175,930 to 175,962 11427100 11569463 - no description, at 175,930 to 175,962 11569463 11711855 - no description, at 175,930 to 175,962 11711855 11427101 - no description, at 175,963 to 175,994 11427101 11569464 - no description, at 175,963 to 175,994 11569464 11711856 - no description, at 175,963 to 175,994 11711856 11427102 - no description, at 175,995 to 176,029 11427102 11569465 - no description, at 175,995 to 176,029 11569465 11711857 - no description, at 175,995 to 176,029 11711857 11427103 - no description, at 176,030 to 176,061 11427103 11569466 - no description, at 176,030 to 176,061 11569466 11711858 - no description, at 176,030 to 176,061 11711858 11427104 - no description, at 176,062 to 176,097 11427104 11569467 - no description, at 176,062 to 176,097 11569467 11711859 - no description, at 176,062 to 176,097 11711859 11427105 - no description, at 176,098 to 176,129 11427105 11569468 - no description, at 176,098 to 176,129 11569468 11711860 - no description, at 176,098 to 176,129 11711860 11427106 - no description, at 176,130 to 176,162 11427106 11569469 - no description, at 176,130 to 176,162 11569469 11711861 - no description, at 176,130 to 176,162 11711861 11427107 - no description, at 176,163 to 176,194 11427107 11569470 - no description, at 176,163 to 176,194 11569470 11711862 - no description, at 176,163 to 176,194 11711862 11427108 - no description, at 176,195 to 176,228 11427108 11569471 - no description, at 176,195 to 176,228 11569471 11711863 - no description, at 176,195 to 176,228 11711863 11427109 - no description, at 176,229 to 176,260 11427109 11569472 - no description, at 176,229 to 176,260 11569472 11711864 - no description, at 176,229 to 176,260 11711864 11427110 - no description, at 176,261 to 176,292 11427110 11569473 - no description, at 176,261 to 176,292 11569473 11711865 - no description, at 176,261 to 176,292 11711865 11427111 - no description, at 176,293 to 176,324 11427111 11569474 - no description, at 176,293 to 176,324 11569474 11711866 - no description, at 176,293 to 176,324 11711866 11427112 - no description, at 176,325 to 176,358 11427112 11569475 - no description, at 176,325 to 176,358 11569475 11711867 - no description, at 176,325 to 176,358 11711867 11427113 - no description, at 176,359 to 176,390 11427113 11569476 - no description, at 176,359 to 176,390 11569476 11711868 - no description, at 176,359 to 176,390 11711868 11427114 - no description, at 176,391 to 176,425 11427114 11569477 - no description, at 176,391 to 176,425 11569477 11711869 - no description, at 176,391 to 176,425 11711869 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 173.490 kb on + strand, within DVUA0132at 173.523 kb on + strand, within DVUA0132at 173.523 kb on + strand, within DVUA0132at 173.523 kb on + strand, within DVUA0132at 173.523 kb on + strand, within DVUA0132at 173.531 kb on - strand, within DVUA0132at 173.531 kb on - strand, within DVUA0132at 173.611 kb on + strand, within DVUA0132at 173.672 kb on - strand, within DVUA0132at 173.723 kb on + strandat 173.736 kb on - strandat 173.744 kb on + strandat 173.751 kb on + strandat 173.816 kb on + strandat 173.821 kb on + strandat 173.821 kb on + strandat 173.871 kb on - strand, within DVUA0133at 173.876 kb on + strand, within DVUA0133at 173.889 kb on - strand, within DVUA0133at 173.889 kb on - strand, within DVUA0133at 173.924 kb on + strand, within DVUA0133at 173.930 kb on - strand, within DVUA0133at 173.964 kb on + strand, within DVUA0133at 173.964 kb on + strand, within DVUA0133at 173.993 kb on - strand, within DVUA0133at 174.003 kb on - strand, within DVUA0133at 174.014 kb on + strand, within DVUA0133at 174.033 kb on + strand, within DVUA0133at 174.040 kb on + strand, within DVUA0133at 174.095 kb on + strand, within DVUA0133at 174.163 kb on + strand, within DVUA0133at 174.325 kb on - strand, within DVUA0133at 174.352 kb on + strandat 174.367 kb on + strandat 174.367 kb on - strandat 174.404 kb on + strandat 174.412 kb on - strandat 174.442 kb on + strandat 174.450 kb on - strandat 174.473 kb on + strandat 174.548 kb on - strand, within cas1at 174.558 kb on - strand, within cas1at 174.630 kb on + strand, within cas1at 174.660 kb on - strand, within cas1at 174.677 kb on + strand, within cas1at 174.711 kb on - strand, within cas1at 174.780 kb on - strand, within cas1at 174.859 kb on - strand, within cas1at 174.906 kb on + strand, within cas1at 174.906 kb on + strand, within cas1at 174.984 kb on + strand, within cas1at 175.024 kb on - strand, within cas1at 175.033 kb on + strand, within cas1at 175.041 kb on - strand, within cas1at 175.052 kb on + strand, within cas1at 175.125 kb on - strand, within cas1at 175.142 kb on + strand, within cas1at 175.271 kb on - strand, within cas1at 175.333 kb on + strandat 175.341 kb on - strandat 175.356 kb on - strandat 175.559 kb on + strand, within DVUA0135at 175.559 kb on + strand, within DVUA0135at 175.559 kb on + strand, within DVUA0135at 175.637 kb on - strand, within DVUA0135at 175.806 kb on - strandat 175.806 kb on - strandat 175.827 kb on - strandat 175.837 kb on + strandat 175.873 kb on - strandat 176.267 kb on + strandat 176.284 kb on + strandat 176.284 kb on + strandat 176.310 kb on + strandat 176.316 kb on + strandat 176.352 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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173,490 + DVUA0132 0.68 +0.6
173,523 + DVUA0132 0.72 -1.5
173,523 + DVUA0132 0.72 -0.1
173,523 + DVUA0132 0.72 +4.1
173,523 + DVUA0132 0.72 -0.6
173,531 - DVUA0132 0.73 -0.2
173,531 - DVUA0132 0.73 +0.4
173,611 + DVUA0132 0.82 -0.1
173,672 - DVUA0132 0.89 +0.1
173,723 + -0.8
173,736 - -0.3
173,744 + -1.0
173,751 + +0.9
173,816 + -0.1
173,821 + -0.3
173,821 + +0.9
173,871 - DVUA0133 0.16 -0.8
173,876 + DVUA0133 0.16 +0.5
173,889 - DVUA0133 0.18 -0.9
173,889 - DVUA0133 0.18 +0.0
173,924 + DVUA0133 0.24 -0.1
173,930 - DVUA0133 0.25 -0.5
173,964 + DVUA0133 0.30 +0.4
173,964 + DVUA0133 0.30 -0.2
173,993 - DVUA0133 0.35 -0.2
174,003 - DVUA0133 0.36 -0.4
174,014 + DVUA0133 0.38 -0.1
174,033 + DVUA0133 0.41 +0.5
174,040 + DVUA0133 0.42 +0.3
174,095 + DVUA0133 0.51 -0.4
174,163 + DVUA0133 0.61 +1.1
174,325 - DVUA0133 0.87 -3.1
174,352 + -0.7
174,367 + +1.2
174,367 - -0.0
174,404 + +0.9
174,412 - +0.1
174,442 + -0.7
174,450 - +0.4
174,473 + -0.1
174,548 - cas1 DVUA0134 0.15 -0.2
174,558 - cas1 DVUA0134 0.16 -0.6
174,630 + cas1 DVUA0134 0.23 -0.5
174,660 - cas1 DVUA0134 0.26 -0.7
174,677 + cas1 DVUA0134 0.28 +0.2
174,711 - cas1 DVUA0134 0.31 -0.5
174,780 - cas1 DVUA0134 0.38 -0.6
174,859 - cas1 DVUA0134 0.45 +0.1
174,906 + cas1 DVUA0134 0.50 -0.1
174,906 + cas1 DVUA0134 0.50 -0.2
174,984 + cas1 DVUA0134 0.57 -0.2
175,024 - cas1 DVUA0134 0.61 +0.6
175,033 + cas1 DVUA0134 0.62 -2.2
175,041 - cas1 DVUA0134 0.63 -1.0
175,052 + cas1 DVUA0134 0.64 -0.1
175,125 - cas1 DVUA0134 0.71 -0.8
175,142 + cas1 DVUA0134 0.73 -0.7
175,271 - cas1 DVUA0134 0.85 -2.7
175,333 + -1.4
175,341 - -0.6
175,356 - +0.5
175,559 + DVUA0135 0.48 -1.0
175,559 + DVUA0135 0.48 -0.0
175,559 + DVUA0135 0.48 +0.0
175,637 - DVUA0135 0.73 +0.5
175,806 - -0.9
175,806 - -0.2
175,827 - +0.5
175,837 + +0.0
175,873 - -0.6
176,267 + -0.4
176,284 + +0.7
176,284 + +0.4
176,310 + +0.2
176,316 + +0.9
176,352 + -0.1

Or see this region's nucleotide sequence