Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0494 and DVU0495 are separated by 10 nucleotides DVU0495 and polA are separated by 192 nucleotides
DVU0494: DVU0494 - aminotransferase, class V (TIGR), at 562,711 to 563,880
DVU0494
DVU0495: DVU0495 - conserved hypothetical protein (TIGR), at 563,891 to 565,087
DVU0495
DVU0496: polA - DNA polymerase I (TIGR), at 565,280 to 568,327
polA
Position (kb) 563
564
565
566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 563.897 kb on - strand at 563.921 kb on - strand at 563.969 kb on + strand at 564.038 kb on + strand, within DVU0495 at 564.147 kb on - strand, within DVU0495 at 564.192 kb on + strand, within DVU0495 at 564.200 kb on - strand, within DVU0495 at 564.254 kb on + strand, within DVU0495 at 564.254 kb on + strand, within DVU0495 at 564.257 kb on - strand, within DVU0495 at 564.262 kb on - strand, within DVU0495 at 564.262 kb on - strand, within DVU0495 at 564.307 kb on - strand, within DVU0495 at 564.307 kb on - strand, within DVU0495 at 564.414 kb on + strand, within DVU0495 at 564.414 kb on + strand, within DVU0495 at 564.491 kb on + strand, within DVU0495 at 564.539 kb on + strand, within DVU0495 at 564.649 kb on + strand, within DVU0495 at 564.796 kb on - strand, within DVU0495 at 564.796 kb on - strand, within DVU0495 at 564.805 kb on + strand, within DVU0495 at 564.809 kb on + strand, within DVU0495 at 564.887 kb on + strand, within DVU0495 at 564.895 kb on - strand, within DVU0495 at 564.979 kb on - strand at 565.015 kb on + strand at 565.149 kb on - strand at 565.260 kb on + strand at 565.260 kb on + strand at 565.293 kb on + strand at 565.293 kb on + strand at 565.301 kb on - strand at 565.301 kb on - strand at 565.301 kb on - strand at 565.365 kb on - strand at 565.891 kb on - strand, within polA
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 563,897 - +0.5 563,921 - -1.0 563,969 + -1.2 564,038 + DVU0495 0.12 +1.5 564,147 - DVU0495 0.21 +2.5 564,192 + DVU0495 0.25 -0.1 564,200 - DVU0495 0.26 +0.0 564,254 + DVU0495 0.30 -0.6 564,254 + DVU0495 0.30 -0.6 564,257 - DVU0495 0.31 -1.0 564,262 - DVU0495 0.31 +4.8 564,262 - DVU0495 0.31 -0.1 564,307 - DVU0495 0.35 +1.5 564,307 - DVU0495 0.35 +0.9 564,414 + DVU0495 0.44 -1.2 564,414 + DVU0495 0.44 -0.8 564,491 + DVU0495 0.50 +1.5 564,539 + DVU0495 0.54 +0.2 564,649 + DVU0495 0.63 +0.5 564,796 - DVU0495 0.76 -1.7 564,796 - DVU0495 0.76 -0.1 564,805 + DVU0495 0.76 +0.9 564,809 + DVU0495 0.77 -4.0 564,887 + DVU0495 0.83 -0.8 564,895 - DVU0495 0.84 -0.5 564,979 - -1.0 565,015 + +0.9 565,149 - -0.3 565,260 + +0.4 565,260 + +0.2 565,293 + +0.9 565,293 + +0.5 565,301 - +0.5 565,301 - -0.3 565,301 - +0.4 565,365 - -1.0 565,891 - polA DVU0496 0.20 -0.7
Or see this region's nucleotide sequence