Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2839

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2838 and DVU2839 are separated by 0 nucleotidesDVU2839 and DVU2840 are separated by 108 nucleotidesDVU2840 and DVU2841 overlap by 1 nucleotides DVU2838: DVU2838 - conserved hypothetical protein (TIGR), at 2,942,313 to 2,943,650 DVU2838 DVU2839: DVU2839 - conserved hypothetical protein (TIGR), at 2,943,651 to 2,944,175 DVU2839 DVU2840: DVU2840 - conserved hypothetical protein (TIGR), at 2,944,284 to 2,944,985 DVU2840 DVU2841: DVU2841 - type II restriction endonuclease, putative (TIGR), at 2,944,985 to 2,946,184 DVU2841 Position (kb) 2943 2944 2945Strain fitness (log2 ratio) -2 -1 0 1at 2942.929 kb on + strand, within DVU2838at 2943.142 kb on + strand, within DVU2838at 2943.218 kb on + strand, within DVU2838at 2943.218 kb on + strand, within DVU2838at 2943.226 kb on - strand, within DVU2838at 2943.278 kb on + strand, within DVU2838at 2943.286 kb on - strand, within DVU2838at 2943.307 kb on + strand, within DVU2838at 2943.529 kb on - strandat 2943.595 kb on - strandat 2943.709 kb on + strand, within DVU2839at 2943.988 kb on + strand, within DVU2839at 2944.091 kb on + strand, within DVU2839at 2944.112 kb on + strand, within DVU2839at 2944.803 kb on + strand, within DVU2840at 2945.136 kb on - strand, within DVU2841

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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2,942,929 + DVU2838 0.46 -1.0
2,943,142 + DVU2838 0.62 +0.2
2,943,218 + DVU2838 0.68 -1.1
2,943,218 + DVU2838 0.68 -0.8
2,943,226 - DVU2838 0.68 +0.9
2,943,278 + DVU2838 0.72 -0.0
2,943,286 - DVU2838 0.73 +0.2
2,943,307 + DVU2838 0.74 -0.2
2,943,529 - -0.1
2,943,595 - -0.5
2,943,709 + DVU2839 0.11 -2.6
2,943,988 + DVU2839 0.64 -0.8
2,944,091 + DVU2839 0.84 -1.7
2,944,112 + DVU2839 0.88 -1.1
2,944,803 + DVU2840 0.74 -0.5
2,945,136 - DVU2841 0.13 -2.0

Or see this region's nucleotide sequence