Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0712 and livH are separated by 77 nucleotides livH and livM overlap by 4 nucleotides livM and livG overlap by 4 nucleotides
DVU0712: DVU0712 - amino acid ABC transporter, periplasmic-binding protein (TIGR), at 791,681 to 792,811
DVU0712
DVU0713: livH - branched-chain amino acid ABC transporter, permease protein (TIGR), at 792,889 to 793,794
livH
DVU0714: livM - branched-chain amino acid ABC transporter, permease protein (TIGR), at 793,791 to 794,744
livM
DVU0715: livG - branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 794,741 to 795,508
livG
Position (kb) 792
793
794 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 791.933 kb on - strand, within DVU0712 at 791.933 kb on - strand, within DVU0712 at 792.016 kb on + strand, within DVU0712 at 792.113 kb on - strand, within DVU0712 at 792.154 kb on + strand, within DVU0712 at 792.223 kb on + strand, within DVU0712 at 792.223 kb on + strand, within DVU0712 at 792.231 kb on - strand, within DVU0712 at 792.287 kb on - strand, within DVU0712 at 792.353 kb on + strand, within DVU0712 at 792.353 kb on + strand, within DVU0712 at 792.363 kb on - strand, within DVU0712 at 792.451 kb on + strand, within DVU0712 at 792.538 kb on + strand, within DVU0712 at 792.540 kb on - strand, within DVU0712 at 792.560 kb on + strand, within DVU0712 at 792.577 kb on + strand, within DVU0712 at 792.577 kb on + strand, within DVU0712 at 792.577 kb on + strand, within DVU0712 at 792.594 kb on - strand, within DVU0712 at 792.599 kb on - strand, within DVU0712 at 792.599 kb on - strand, within DVU0712 at 792.604 kb on - strand, within DVU0712 at 792.628 kb on - strand, within DVU0712 at 792.660 kb on - strand, within DVU0712 at 792.716 kb on + strand at 792.765 kb on + strand at 792.805 kb on + strand at 792.813 kb on - strand at 792.833 kb on + strand at 792.833 kb on + strand at 792.841 kb on - strand at 792.841 kb on - strand at 792.841 kb on - strand at 792.878 kb on - strand at 792.957 kb on + strand at 792.969 kb on + strand at 793.020 kb on - strand, within livH at 793.083 kb on - strand, within livH at 793.101 kb on + strand, within livH at 793.109 kb on - strand, within livH at 793.195 kb on + strand, within livH at 793.203 kb on - strand, within livH at 793.248 kb on - strand, within livH at 793.258 kb on + strand, within livH at 793.263 kb on + strand, within livH at 793.263 kb on + strand, within livH at 793.263 kb on + strand, within livH at 793.308 kb on - strand, within livH at 793.347 kb on + strand, within livH at 793.352 kb on + strand, within livH at 793.363 kb on - strand, within livH at 793.429 kb on + strand, within livH at 793.448 kb on - strand, within livH at 793.452 kb on + strand, within livH at 793.491 kb on - strand, within livH at 793.502 kb on + strand, within livH at 793.520 kb on - strand, within livH at 793.545 kb on - strand, within livH at 793.576 kb on + strand, within livH at 793.657 kb on - strand, within livH at 793.687 kb on - strand, within livH at 793.697 kb on - strand, within livH at 793.755 kb on + strand at 793.762 kb on - strand at 793.795 kb on - strand at 793.827 kb on - strand at 793.827 kb on - strand at 793.829 kb on + strand at 793.875 kb on - strand at 793.941 kb on + strand, within livM at 794.000 kb on + strand, within livM at 794.008 kb on - strand, within livM at 794.008 kb on - strand, within livM at 794.008 kb on - strand, within livM at 794.083 kb on - strand, within livM at 794.146 kb on - strand, within livM at 794.251 kb on - strand, within livM at 794.333 kb on - strand, within livM at 794.345 kb on - strand, within livM at 794.399 kb on + strand, within livM at 794.441 kb on + strand, within livM at 794.480 kb on - strand, within livM at 794.632 kb on + strand, within livM at 794.657 kb on - strand at 794.678 kb on - strand at 794.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 791,933 - DVU0712 0.22 +3.1 791,933 - DVU0712 0.22 +2.6 792,016 + DVU0712 0.30 +1.4 792,113 - DVU0712 0.38 +2.6 792,154 + DVU0712 0.42 +0.2 792,223 + DVU0712 0.48 +1.6 792,223 + DVU0712 0.48 +0.8 792,231 - DVU0712 0.49 +1.2 792,287 - DVU0712 0.54 +1.2 792,353 + DVU0712 0.59 +2.4 792,353 + DVU0712 0.59 +2.3 792,363 - DVU0712 0.60 +0.5 792,451 + DVU0712 0.68 +1.8 792,538 + DVU0712 0.76 +2.7 792,540 - DVU0712 0.76 +1.5 792,560 + DVU0712 0.78 +2.5 792,577 + DVU0712 0.79 +2.0 792,577 + DVU0712 0.79 +1.3 792,577 + DVU0712 0.79 -0.4 792,594 - DVU0712 0.81 +3.3 792,599 - DVU0712 0.81 -0.0 792,599 - DVU0712 0.81 +4.0 792,604 - DVU0712 0.82 +2.5 792,628 - DVU0712 0.84 +1.6 792,660 - DVU0712 0.87 +1.9 792,716 + +2.7 792,765 + +1.3 792,805 + +2.1 792,813 - +0.3 792,833 + +1.1 792,833 + +0.1 792,841 - +1.6 792,841 - +2.4 792,841 - -0.4 792,878 - +1.1 792,957 + +1.9 792,969 + +3.0 793,020 - livH DVU0713 0.14 +2.8 793,083 - livH DVU0713 0.21 +2.4 793,101 + livH DVU0713 0.23 +2.3 793,109 - livH DVU0713 0.24 +1.3 793,195 + livH DVU0713 0.34 -0.4 793,203 - livH DVU0713 0.35 -0.4 793,248 - livH DVU0713 0.40 +2.5 793,258 + livH DVU0713 0.41 +1.0 793,263 + livH DVU0713 0.41 +2.6 793,263 + livH DVU0713 0.41 +3.3 793,263 + livH DVU0713 0.41 +2.6 793,308 - livH DVU0713 0.46 +2.8 793,347 + livH DVU0713 0.51 +4.1 793,352 + livH DVU0713 0.51 +0.4 793,363 - livH DVU0713 0.52 +1.3 793,429 + livH DVU0713 0.60 +2.6 793,448 - livH DVU0713 0.62 +1.9 793,452 + livH DVU0713 0.62 +1.9 793,491 - livH DVU0713 0.66 +1.5 793,502 + livH DVU0713 0.68 +0.8 793,520 - livH DVU0713 0.70 +1.5 793,545 - livH DVU0713 0.72 +1.3 793,576 + livH DVU0713 0.76 +1.2 793,657 - livH DVU0713 0.85 +2.2 793,687 - livH DVU0713 0.88 +0.8 793,697 - livH DVU0713 0.89 +0.9 793,755 + +1.4 793,762 - +0.5 793,795 - +2.1 793,827 - +1.0 793,827 - +1.1 793,829 + -0.0 793,875 - +1.3 793,941 + livM DVU0714 0.16 +2.1 794,000 + livM DVU0714 0.22 +2.2 794,008 - livM DVU0714 0.23 +1.3 794,008 - livM DVU0714 0.23 +1.8 794,008 - livM DVU0714 0.23 -0.9 794,083 - livM DVU0714 0.31 +2.5 794,146 - livM DVU0714 0.37 +1.9 794,251 - livM DVU0714 0.48 +0.7 794,333 - livM DVU0714 0.57 +2.2 794,345 - livM DVU0714 0.58 +2.3 794,399 + livM DVU0714 0.64 +0.8 794,441 + livM DVU0714 0.68 +2.4 794,480 - livM DVU0714 0.72 +2.1 794,632 + livM DVU0714 0.88 +1.4 794,657 - +2.0 794,678 - +2.5 794,678 - +2.5
Or see this region's nucleotide sequence