Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0482 and DVU0483 are separated by 299 nucleotides DVU0483 and DVU0484 are separated by 202 nucleotides DVU0484 and DVU0485 overlap by 4 nucleotides
DVU0482: DVU0482 - sensory box histidine kinase/response regulator (TIGR), at 548,195 to 549,643
DVU0482
DVU0483: DVU0483 - DNA mismatch repair protein MutL, putative (TIGR), at 549,943 to 552,177
DVU0483
DVU0484: DVU0484 - ABC transporter, ATP-binding protein (TIGR), at 552,380 to 553,174
DVU0484
DVU0485: DVU0485 - membrane protein, putative (TIGR), at 553,171 to 553,956
DVU0485
Position (kb) 549
550
551
552
553 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 548.954 kb on + strand, within DVU0482 at 549.026 kb on + strand, within DVU0482 at 549.048 kb on + strand, within DVU0482 at 549.056 kb on - strand, within DVU0482 at 549.056 kb on - strand, within DVU0482 at 549.056 kb on - strand, within DVU0482 at 549.061 kb on - strand, within DVU0482 at 549.095 kb on + strand, within DVU0482 at 549.128 kb on + strand, within DVU0482 at 549.128 kb on + strand, within DVU0482 at 549.136 kb on - strand, within DVU0482 at 549.166 kb on + strand, within DVU0482 at 549.174 kb on + strand, within DVU0482 at 549.242 kb on + strand, within DVU0482 at 549.250 kb on - strand, within DVU0482 at 549.250 kb on - strand, within DVU0482 at 549.300 kb on - strand, within DVU0482 at 549.486 kb on - strand, within DVU0482 at 549.486 kb on - strand, within DVU0482 at 549.702 kb on - strand at 549.719 kb on + strand at 549.764 kb on + strand at 549.793 kb on + strand at 549.796 kb on - strand at 549.808 kb on - strand at 549.932 kb on + strand at 549.939 kb on + strand at 549.975 kb on - strand at 549.999 kb on - strand at 549.999 kb on - strand at 550.064 kb on + strand at 550.076 kb on - strand at 550.091 kb on + strand at 550.129 kb on - strand at 550.178 kb on - strand, within DVU0483 at 550.183 kb on - strand, within DVU0483 at 550.220 kb on + strand, within DVU0483 at 550.226 kb on - strand, within DVU0483 at 550.235 kb on + strand, within DVU0483 at 550.243 kb on - strand, within DVU0483 at 550.274 kb on - strand, within DVU0483 at 550.400 kb on - strand, within DVU0483 at 550.512 kb on - strand, within DVU0483 at 550.561 kb on + strand, within DVU0483 at 550.589 kb on - strand, within DVU0483 at 550.616 kb on + strand, within DVU0483 at 550.639 kb on - strand, within DVU0483 at 550.639 kb on - strand, within DVU0483 at 550.733 kb on - strand, within DVU0483 at 550.733 kb on - strand, within DVU0483 at 550.785 kb on + strand, within DVU0483 at 550.790 kb on + strand, within DVU0483 at 550.855 kb on + strand, within DVU0483 at 550.877 kb on - strand, within DVU0483 at 550.900 kb on + strand, within DVU0483 at 550.924 kb on - strand, within DVU0483 at 550.961 kb on + strand, within DVU0483 at 550.969 kb on - strand, within DVU0483 at 551.146 kb on + strand, within DVU0483 at 551.146 kb on + strand, within DVU0483 at 551.146 kb on + strand, within DVU0483 at 551.154 kb on - strand, within DVU0483 at 551.154 kb on - strand, within DVU0483 at 551.154 kb on - strand, within DVU0483 at 551.200 kb on - strand, within DVU0483 at 551.200 kb on - strand, within DVU0483 at 551.253 kb on + strand, within DVU0483 at 551.342 kb on + strand, within DVU0483 at 551.342 kb on + strand, within DVU0483 at 551.342 kb on + strand, within DVU0483 at 551.350 kb on - strand, within DVU0483 at 551.350 kb on - strand, within DVU0483 at 551.350 kb on - strand, within DVU0483 at 551.359 kb on + strand, within DVU0483 at 551.473 kb on + strand, within DVU0483 at 551.481 kb on - strand, within DVU0483 at 551.510 kb on + strand, within DVU0483 at 551.530 kb on + strand, within DVU0483 at 551.538 kb on - strand, within DVU0483 at 551.607 kb on - strand, within DVU0483 at 551.722 kb on + strand, within DVU0483 at 551.941 kb on + strand, within DVU0483 at 551.987 kb on + strand at 552.006 kb on + strand at 552.039 kb on + strand at 552.047 kb on - strand at 552.084 kb on - strand at 552.194 kb on - strand at 552.210 kb on - strand at 552.217 kb on - strand at 552.250 kb on + strand at 552.333 kb on + strand at 552.341 kb on - strand at 552.341 kb on - strand at 552.341 kb on - strand at 552.341 kb on - strand at 552.360 kb on + strand at 552.360 kb on + strand at 552.374 kb on + strand at 552.374 kb on - strand at 552.460 kb on - strand, within DVU0484 at 552.540 kb on + strand, within DVU0484 at 552.622 kb on + strand, within DVU0484 at 552.706 kb on + strand, within DVU0484 at 552.778 kb on - strand, within DVU0484 at 552.804 kb on + strand, within DVU0484 at 552.812 kb on - strand, within DVU0484 at 552.826 kb on + strand, within DVU0484 at 552.829 kb on - strand, within DVU0484 at 553.016 kb on + strand, within DVU0484 at 553.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 548,954 + DVU0482 0.52 -0.5 549,026 + DVU0482 0.57 +0.5 549,048 + DVU0482 0.59 +0.0 549,056 - DVU0482 0.59 -0.8 549,056 - DVU0482 0.59 -0.2 549,056 - DVU0482 0.59 -1.0 549,061 - DVU0482 0.60 -0.1 549,095 + DVU0482 0.62 -0.6 549,128 + DVU0482 0.64 -0.8 549,128 + DVU0482 0.64 -0.6 549,136 - DVU0482 0.65 -0.1 549,166 + DVU0482 0.67 -0.8 549,174 + DVU0482 0.68 -0.4 549,242 + DVU0482 0.72 -3.4 549,250 - DVU0482 0.73 -0.6 549,250 - DVU0482 0.73 -0.6 549,300 - DVU0482 0.76 -0.3 549,486 - DVU0482 0.89 -0.6 549,486 - DVU0482 0.89 -0.8 549,702 - -0.4 549,719 + -0.8 549,764 + -0.8 549,793 + -0.7 549,796 - +0.1 549,808 - -0.5 549,932 + -0.5 549,939 + +2.3 549,975 - -0.4 549,999 - -0.0 549,999 - -1.7 550,064 + -1.4 550,076 - -0.8 550,091 + -0.6 550,129 - -1.0 550,178 - DVU0483 0.11 +0.7 550,183 - DVU0483 0.11 -0.4 550,220 + DVU0483 0.12 -1.0 550,226 - DVU0483 0.13 -4.6 550,235 + DVU0483 0.13 -1.0 550,243 - DVU0483 0.13 +0.3 550,274 - DVU0483 0.15 +0.7 550,400 - DVU0483 0.20 -1.4 550,512 - DVU0483 0.25 -1.0 550,561 + DVU0483 0.28 +0.0 550,589 - DVU0483 0.29 -1.6 550,616 + DVU0483 0.30 -1.4 550,639 - DVU0483 0.31 -0.8 550,639 - DVU0483 0.31 -1.1 550,733 - DVU0483 0.35 -1.4 550,733 - DVU0483 0.35 -1.1 550,785 + DVU0483 0.38 -0.3 550,790 + DVU0483 0.38 -2.1 550,855 + DVU0483 0.41 -1.4 550,877 - DVU0483 0.42 -3.5 550,900 + DVU0483 0.43 -0.6 550,924 - DVU0483 0.44 -0.3 550,961 + DVU0483 0.46 -0.2 550,969 - DVU0483 0.46 -1.7 551,146 + DVU0483 0.54 -2.0 551,146 + DVU0483 0.54 +0.3 551,146 + DVU0483 0.54 -2.5 551,154 - DVU0483 0.54 -1.2 551,154 - DVU0483 0.54 -1.0 551,154 - DVU0483 0.54 -1.7 551,200 - DVU0483 0.56 -1.1 551,200 - DVU0483 0.56 -1.7 551,253 + DVU0483 0.59 -2.3 551,342 + DVU0483 0.63 -2.7 551,342 + DVU0483 0.63 -1.8 551,342 + DVU0483 0.63 -1.6 551,350 - DVU0483 0.63 -1.8 551,350 - DVU0483 0.63 -1.2 551,350 - DVU0483 0.63 -1.8 551,359 + DVU0483 0.63 -1.5 551,473 + DVU0483 0.68 -1.8 551,481 - DVU0483 0.69 -1.3 551,510 + DVU0483 0.70 +0.3 551,530 + DVU0483 0.71 -3.2 551,538 - DVU0483 0.71 -0.7 551,607 - DVU0483 0.74 -0.7 551,722 + DVU0483 0.80 -2.1 551,941 + DVU0483 0.89 -0.6 551,987 + -1.6 552,006 + +0.0 552,039 + -3.1 552,047 - -2.6 552,084 - -0.7 552,194 - -0.7 552,210 - +0.9 552,217 - -1.5 552,250 + -2.3 552,333 + -2.5 552,341 - -1.8 552,341 - -3.4 552,341 - -1.4 552,341 - -1.6 552,360 + -2.7 552,360 + -0.8 552,374 + -0.5 552,374 - +0.7 552,460 - DVU0484 0.10 +0.4 552,540 + DVU0484 0.20 -0.9 552,622 + DVU0484 0.30 +1.8 552,706 + DVU0484 0.41 +0.8 552,778 - DVU0484 0.50 +1.9 552,804 + DVU0484 0.53 -1.0 552,812 - DVU0484 0.54 +1.4 552,826 + DVU0484 0.56 +1.8 552,829 - DVU0484 0.56 +0.7 553,016 + DVU0484 0.80 -1.0 553,144 + +0.9
Or see this region's nucleotide sequence