Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF2077 and DVUA0108 overlap by 76 nucleotides DVUA0108 and DVUA0109 are separated by 8 nucleotides DVUA0109 and DVUA0110 overlap by 4 nucleotides
DORF2077: DORF2077 - SEED: FIG00603320: hypothetical protein, at 145,353 to 145,655
DORF2077
DVUA0108: DVUA0108 - hypothetical protein (TIGR), at 145,580 to 146,200
DVUA0108
DVUA0109: DVUA0109 - type III secretion system chaperone, LcrH/SycD family (TIGR), at 146,209 to 146,709
DVUA0109
DVUA0110: DVUA0110 - type III secretion system target, YopB family (TIGR), at 146,706 to 147,713
DVUA0110
DVUA0111: DVUA0111 - type III secretion system protein, IpaC family, putative (TIGR), at 147,662 to 148,558
DVUA0111
Position (kb) 146
147 Strain fitness (log2 ratio) -1
0
1
2
3 at 145.214 kb on - strand at 145.335 kb on - strand at 145.335 kb on - strand at 145.343 kb on - strand at 145.400 kb on - strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.466 kb on + strand, within DORF2077 at 145.495 kb on - strand, within DORF2077 at 145.517 kb on + strand, within DORF2077 at 145.543 kb on - strand, within DORF2077 at 145.577 kb on + strand, within DORF2077 at 145.580 kb on + strand at 145.599 kb on + strand at 145.740 kb on + strand, within DVUA0108 at 145.766 kb on - strand, within DVUA0108 at 145.838 kb on + strand, within DVUA0108 at 145.875 kb on + strand, within DVUA0108 at 145.906 kb on - strand, within DVUA0108 at 145.987 kb on + strand, within DVUA0108 at 146.011 kb on + strand, within DVUA0108 at 146.011 kb on + strand, within DVUA0108 at 146.018 kb on + strand, within DVUA0108 at 146.044 kb on + strand, within DVUA0108 at 146.071 kb on - strand, within DVUA0108 at 146.089 kb on - strand, within DVUA0108 at 146.112 kb on - strand, within DVUA0108 at 146.127 kb on - strand, within DVUA0108 at 146.127 kb on - strand, within DVUA0108 at 146.137 kb on + strand, within DVUA0108 at 146.228 kb on - strand at 146.307 kb on + strand, within DVUA0109 at 146.359 kb on - strand, within DVUA0109 at 146.359 kb on - strand, within DVUA0109 at 146.400 kb on - strand, within DVUA0109 at 146.431 kb on + strand, within DVUA0109 at 146.447 kb on + strand, within DVUA0109 at 146.466 kb on + strand, within DVUA0109 at 146.567 kb on + strand, within DVUA0109 at 146.585 kb on - strand, within DVUA0109 at 146.614 kb on - strand, within DVUA0109 at 146.661 kb on + strand at 146.661 kb on + strand at 146.674 kb on - strand at 146.767 kb on + strand at 146.767 kb on + strand at 146.767 kb on + strand at 146.808 kb on + strand, within DVUA0110 at 146.815 kb on - strand, within DVUA0110 at 146.856 kb on + strand, within DVUA0110 at 146.892 kb on + strand, within DVUA0110 at 146.962 kb on - strand, within DVUA0110 at 147.177 kb on + strand, within DVUA0110 at 147.185 kb on - strand, within DVUA0110 at 147.208 kb on - strand, within DVUA0110 at 147.244 kb on - strand, within DVUA0110 at 147.257 kb on + strand, within DVUA0110 at 147.290 kb on - strand, within DVUA0110 at 147.320 kb on - strand, within DVUA0110 at 147.336 kb on - strand, within DVUA0110 at 147.383 kb on + strand, within DVUA0110 at 147.383 kb on + strand, within DVUA0110 at 147.391 kb on - strand, within DVUA0110 at 147.416 kb on - strand, within DVUA0110 at 147.444 kb on - strand, within DVUA0110 at 147.471 kb on + strand, within DVUA0110 at 147.471 kb on + strand, within DVUA0110 at 147.476 kb on + strand, within DVUA0110 at 147.476 kb on + strand, within DVUA0110 at 147.672 kb on - strand at 147.679 kb on + strand at 147.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 145,214 - +0.7 145,335 - +0.4 145,335 - -1.5 145,343 - -0.6 145,400 - DORF2077 0.16 -0.2 145,448 + DORF2077 0.31 -0.6 145,448 + DORF2077 0.31 +0.3 145,466 + DORF2077 0.37 +0.6 145,495 - DORF2077 0.47 -0.1 145,517 + DORF2077 0.54 +0.2 145,543 - DORF2077 0.63 -0.7 145,577 + DORF2077 0.74 +0.5 145,580 + -1.5 145,599 + +0.7 145,740 + DVUA0108 0.26 +0.5 145,766 - DVUA0108 0.30 -0.3 145,838 + DVUA0108 0.42 -0.4 145,875 + DVUA0108 0.48 -0.4 145,906 - DVUA0108 0.52 -0.7 145,987 + DVUA0108 0.66 +0.2 146,011 + DVUA0108 0.69 -0.8 146,011 + DVUA0108 0.69 -0.1 146,018 + DVUA0108 0.71 +0.4 146,044 + DVUA0108 0.75 +0.3 146,071 - DVUA0108 0.79 +0.9 146,089 - DVUA0108 0.82 +1.0 146,112 - DVUA0108 0.86 -0.8 146,127 - DVUA0108 0.88 +0.3 146,127 - DVUA0108 0.88 -0.3 146,137 + DVUA0108 0.90 +0.3 146,228 - +1.3 146,307 + DVUA0109 0.20 -1.0 146,359 - DVUA0109 0.30 -0.1 146,359 - DVUA0109 0.30 +0.3 146,400 - DVUA0109 0.38 +1.3 146,431 + DVUA0109 0.44 +3.3 146,447 + DVUA0109 0.48 -0.2 146,466 + DVUA0109 0.51 +1.4 146,567 + DVUA0109 0.71 +0.3 146,585 - DVUA0109 0.75 +0.4 146,614 - DVUA0109 0.81 -0.1 146,661 + +0.7 146,661 + +0.2 146,674 - -1.2 146,767 + -0.2 146,767 + -1.1 146,767 + -0.5 146,808 + DVUA0110 0.10 +0.3 146,815 - DVUA0110 0.11 -0.7 146,856 + DVUA0110 0.15 +0.0 146,892 + DVUA0110 0.18 -0.5 146,962 - DVUA0110 0.25 -0.4 147,177 + DVUA0110 0.47 +0.2 147,185 - DVUA0110 0.48 -1.6 147,208 - DVUA0110 0.50 +0.7 147,244 - DVUA0110 0.53 -0.7 147,257 + DVUA0110 0.55 +0.2 147,290 - DVUA0110 0.58 -0.6 147,320 - DVUA0110 0.61 +0.5 147,336 - DVUA0110 0.62 -1.3 147,383 + DVUA0110 0.67 -0.1 147,383 + DVUA0110 0.67 +0.5 147,391 - DVUA0110 0.68 +0.0 147,416 - DVUA0110 0.70 -0.5 147,444 - DVUA0110 0.73 -1.3 147,471 + DVUA0110 0.76 -0.3 147,471 + DVUA0110 0.76 -0.4 147,476 + DVUA0110 0.76 +0.3 147,476 + DVUA0110 0.76 +0.9 147,672 - -1.4 147,679 + +0.3 147,689 - -0.3
Or see this region's nucleotide sequence