Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0409 and DVU0410 are separated by 5 nucleotides DVU0410 and DVU0411 are separated by 161 nucleotides DVU0411 and DVU0412 are separated by 16 nucleotides DVU0412 and trk1 are separated by 57 nucleotides
DVU0409: DVU0409 - hypothetical protein (TIGR), at 458,875 to 459,225
DVU0409
DVU0410: DVU0410 - hypothetical protein (TIGR), at 459,231 to 459,836
DVU0410
DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671
DVU0411
DVU0412: DVU0412 - potassium uptake protein TrkA, putative (TIGR), at 461,688 to 462,353
DVU0412
DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748
trk1
Position (kb) 459
460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.177 kb on + strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.202 kb on - strand at 459.448 kb on + strand, within DVU0410 at 459.448 kb on + strand, within DVU0410 at 459.482 kb on - strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.562 kb on + strand, within DVU0410 at 459.577 kb on + strand, within DVU0410 at 459.580 kb on - strand, within DVU0410 at 459.585 kb on - strand, within DVU0410 at 459.658 kb on + strand, within DVU0410 at 459.665 kb on - strand, within DVU0410 at 459.685 kb on - strand, within DVU0410 at 459.688 kb on + strand, within DVU0410 at 459.727 kb on - strand, within DVU0410 at 459.737 kb on + strand, within DVU0410 at 459.934 kb on + strand at 460.029 kb on - strand at 460.118 kb on - strand at 460.133 kb on + strand at 460.136 kb on - strand at 460.154 kb on - strand at 460.176 kb on - strand, within DVU0411 at 460.255 kb on - strand, within DVU0411 at 460.294 kb on - strand, within DVU0411 at 460.299 kb on + strand, within DVU0411 at 460.304 kb on + strand, within DVU0411 at 460.316 kb on + strand, within DVU0411 at 460.319 kb on - strand, within DVU0411 at 460.319 kb on - strand, within DVU0411 at 460.321 kb on + strand, within DVU0411 at 460.324 kb on - strand, within DVU0411 at 460.355 kb on - strand, within DVU0411 at 460.423 kb on - strand, within DVU0411 at 460.438 kb on - strand, within DVU0411 at 460.561 kb on + strand, within DVU0411 at 460.566 kb on + strand, within DVU0411 at 460.566 kb on + strand, within DVU0411 at 460.574 kb on - strand, within DVU0411 at 460.589 kb on - strand, within DVU0411 at 460.701 kb on + strand, within DVU0411 at 460.709 kb on - strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.769 kb on + strand, within DVU0411 at 460.876 kb on - strand, within DVU0411 at 460.914 kb on + strand, within DVU0411 at 460.922 kb on - strand, within DVU0411 at 460.924 kb on - strand, within DVU0411 at 460.984 kb on + strand, within DVU0411 at 461.049 kb on - strand, within DVU0411 at 461.132 kb on + strand, within DVU0411 at 461.140 kb on - strand, within DVU0411 at 461.165 kb on + strand, within DVU0411 at 461.361 kb on - strand, within DVU0411 at 461.480 kb on - strand, within DVU0411 at 461.504 kb on + strand at 461.512 kb on - strand at 461.521 kb on + strand at 461.539 kb on - strand at 461.634 kb on + strand at 461.816 kb on + strand, within DVU0412 at 461.824 kb on - strand, within DVU0412 at 461.903 kb on + strand, within DVU0412 at 461.965 kb on - strand, within DVU0412 at 462.012 kb on - strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.181 kb on - strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.274 kb on + strand, within DVU0412 at 462.329 kb on - strand at 462.360 kb on + strand at 462.368 kb on - strand at 462.591 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.653 kb on - strand, within trk1
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 459,177 + DVU0409 0.86 +1.6 459,177 + DVU0409 0.86 +0.4 459,202 - -0.2 459,448 + DVU0410 0.36 -1.2 459,448 + DVU0410 0.36 +0.4 459,482 - DVU0410 0.41 +0.4 459,500 + DVU0410 0.44 -0.2 459,500 + DVU0410 0.44 +1.0 459,500 + DVU0410 0.44 +0.8 459,562 + DVU0410 0.55 +0.4 459,577 + DVU0410 0.57 -2.0 459,580 - DVU0410 0.58 +0.9 459,585 - DVU0410 0.58 -0.1 459,658 + DVU0410 0.70 -0.3 459,665 - DVU0410 0.72 +0.3 459,685 - DVU0410 0.75 -0.6 459,688 + DVU0410 0.75 -0.3 459,727 - DVU0410 0.82 +0.5 459,737 + DVU0410 0.83 -0.6 459,934 + -2.7 460,029 - -2.0 460,118 - +0.8 460,133 + +0.6 460,136 - +0.8 460,154 - +0.3 460,176 - DVU0411 0.11 +1.3 460,255 - DVU0411 0.15 +0.2 460,294 - DVU0411 0.18 +1.8 460,299 + DVU0411 0.18 +0.7 460,304 + DVU0411 0.18 +0.5 460,316 + DVU0411 0.19 +0.0 460,319 - DVU0411 0.19 +0.2 460,319 - DVU0411 0.19 +0.7 460,321 + DVU0411 0.19 +1.6 460,324 - DVU0411 0.19 -0.3 460,355 - DVU0411 0.21 -0.2 460,423 - DVU0411 0.25 -0.1 460,438 - DVU0411 0.26 +1.0 460,561 + DVU0411 0.34 +0.3 460,566 + DVU0411 0.34 +0.2 460,566 + DVU0411 0.34 +2.0 460,574 - DVU0411 0.34 +0.1 460,589 - DVU0411 0.35 -1.5 460,701 + DVU0411 0.42 +0.7 460,709 - DVU0411 0.42 +0.7 460,764 + DVU0411 0.46 +0.1 460,764 + DVU0411 0.46 -1.3 460,769 + DVU0411 0.46 +0.7 460,876 - DVU0411 0.52 +0.8 460,914 + DVU0411 0.55 +0.9 460,922 - DVU0411 0.55 -1.7 460,924 - DVU0411 0.55 +0.8 460,984 + DVU0411 0.59 +1.4 461,049 - DVU0411 0.63 -1.8 461,132 + DVU0411 0.68 +0.9 461,140 - DVU0411 0.68 -1.3 461,165 + DVU0411 0.70 +0.0 461,361 - DVU0411 0.81 +1.5 461,480 - DVU0411 0.89 +0.5 461,504 + -0.5 461,512 - +0.1 461,521 + +0.8 461,539 - +0.5 461,634 + +0.2 461,816 + DVU0412 0.19 +1.3 461,824 - DVU0412 0.20 -1.9 461,903 + DVU0412 0.32 +0.3 461,965 - DVU0412 0.42 +0.7 462,012 - DVU0412 0.49 +0.3 462,046 + DVU0412 0.54 +1.1 462,046 + DVU0412 0.54 +0.2 462,054 - DVU0412 0.55 -1.6 462,054 - DVU0412 0.55 -0.5 462,054 - DVU0412 0.55 +0.7 462,054 - DVU0412 0.55 +0.5 462,181 - DVU0412 0.74 -1.9 462,239 + DVU0412 0.83 -0.6 462,239 + DVU0412 0.83 -1.4 462,274 + DVU0412 0.88 -2.2 462,329 - -1.4 462,360 + -0.9 462,368 - -0.1 462,591 - trk1 DVU0413 0.13 -1.5 462,599 - trk1 DVU0413 0.14 -1.3 462,599 - trk1 DVU0413 0.14 +1.3 462,599 - trk1 DVU0413 0.14 -0.5 462,609 - trk1 DVU0413 0.15 +1.3 462,609 - trk1 DVU0413 0.15 +0.7 462,653 - trk1 DVU0413 0.18 -0.0
Or see this region's nucleotide sequence