Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0349 and spsF are separated by 36 nucleotides spsF and DVU0351 overlap by 4 nucleotides DVU0351 and lpsC are separated by 7 nucleotides
DVU0349: DVU0349 - NeuB family protein (TIGR), at 396,098 to 397,156
DVU0349
DVU0350: spsF - spore coat polysaccharide biosynthesis protein spsF (TIGR), at 397,193 to 397,876
spsF
DVU0351: DVU0351 - cytidine 5monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein (TIGR), at 397,873 to 399,507
DVU0351
DVU0352: lpsC - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 399,515 to 400,696
lpsC
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 396.959 kb on + strand, within DVU0349 at 396.961 kb on + strand, within DVU0349 at 396.998 kb on - strand, within DVU0349 at 397.070 kb on + strand at 397.092 kb on + strand at 397.092 kb on + strand at 397.174 kb on - strand at 397.190 kb on + strand at 397.250 kb on + strand at 397.259 kb on + strand at 397.289 kb on - strand, within spsF at 397.317 kb on + strand, within spsF at 397.326 kb on - strand, within spsF at 397.341 kb on - strand, within spsF at 397.428 kb on + strand, within spsF at 397.428 kb on + strand, within spsF at 397.481 kb on - strand, within spsF at 397.481 kb on - strand, within spsF at 397.517 kb on + strand, within spsF at 397.529 kb on + strand, within spsF at 397.568 kb on - strand, within spsF at 397.568 kb on - strand, within spsF at 397.569 kb on + strand, within spsF at 397.581 kb on + strand, within spsF at 397.598 kb on - strand, within spsF at 397.608 kb on - strand, within spsF at 397.659 kb on + strand, within spsF at 397.671 kb on + strand, within spsF at 397.677 kb on - strand, within spsF at 397.720 kb on + strand, within spsF at 397.813 kb on + strand at 397.847 kb on - strand at 397.869 kb on - strand at 397.898 kb on + strand at 397.913 kb on + strand at 397.921 kb on + strand at 398.020 kb on + strand at 398.024 kb on + strand at 398.031 kb on - strand at 398.151 kb on + strand, within DVU0351 at 398.151 kb on + strand, within DVU0351 at 398.152 kb on + strand, within DVU0351 at 398.195 kb on - strand, within DVU0351 at 398.257 kb on - strand, within DVU0351 at 398.287 kb on - strand, within DVU0351 at 398.295 kb on + strand, within DVU0351 at 398.516 kb on + strand, within DVU0351 at 398.630 kb on + strand, within DVU0351 at 398.638 kb on - strand, within DVU0351 at 398.671 kb on + strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.829 kb on - strand, within DVU0351 at 398.975 kb on - strand, within DVU0351 at 398.985 kb on - strand, within DVU0351 at 398.990 kb on - strand, within DVU0351 at 399.008 kb on + strand, within DVU0351 at 399.013 kb on + strand, within DVU0351 at 399.016 kb on - strand, within DVU0351 at 399.041 kb on - strand, within DVU0351 at 399.141 kb on + strand, within DVU0351 at 399.240 kb on - strand, within DVU0351 at 399.285 kb on + strand, within DVU0351 at 399.293 kb on - strand, within DVU0351 at 399.463 kb on + strand at 399.484 kb on - strand at 399.580 kb on + strand at 399.598 kb on - strand at 399.698 kb on + strand, within lpsC at 399.698 kb on + strand, within lpsC at 399.708 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.721 kb on - strand, within lpsC at 399.721 kb on - strand, within lpsC at 399.787 kb on + strand, within lpsC at 399.788 kb on - strand, within lpsC at 399.888 kb on - strand, within lpsC at 399.911 kb on - strand, within lpsC at 399.913 kb on + strand, within lpsC at 400.085 kb on - strand, within lpsC at 400.102 kb on - strand, within lpsC at 400.139 kb on - strand, within lpsC at 400.187 kb on - strand, within lpsC at 400.204 kb on - strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.243 kb on + strand, within lpsC at 400.262 kb on + strand, within lpsC at 400.314 kb on - strand, within lpsC at 400.317 kb on + strand, within lpsC at 400.386 kb on - strand, within lpsC at 400.389 kb on + strand, within lpsC at 400.407 kb on - strand, within lpsC at 400.422 kb on + strand, within lpsC at 400.427 kb on + strand, within lpsC at 400.454 kb on + strand, within lpsC at 400.490 kb on - strand, within lpsC
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 396,959 + DVU0349 0.81 -2.3 396,961 + DVU0349 0.81 -2.0 396,998 - DVU0349 0.85 -1.9 397,070 + -1.5 397,092 + -3.2 397,092 + -3.1 397,174 - +1.0 397,190 + -0.5 397,250 + -1.1 397,259 + -0.6 397,289 - spsF DVU0350 0.14 -0.7 397,317 + spsF DVU0350 0.18 +0.2 397,326 - spsF DVU0350 0.19 -0.9 397,341 - spsF DVU0350 0.22 -0.2 397,428 + spsF DVU0350 0.34 -0.5 397,428 + spsF DVU0350 0.34 -0.8 397,481 - spsF DVU0350 0.42 -0.0 397,481 - spsF DVU0350 0.42 -1.1 397,517 + spsF DVU0350 0.47 -1.0 397,529 + spsF DVU0350 0.49 +0.2 397,568 - spsF DVU0350 0.55 +1.2 397,568 - spsF DVU0350 0.55 -0.3 397,569 + spsF DVU0350 0.55 -0.1 397,581 + spsF DVU0350 0.57 -0.8 397,598 - spsF DVU0350 0.59 +0.0 397,608 - spsF DVU0350 0.61 +0.2 397,659 + spsF DVU0350 0.68 -0.3 397,671 + spsF DVU0350 0.70 -0.3 397,677 - spsF DVU0350 0.71 -0.3 397,720 + spsF DVU0350 0.77 +0.3 397,813 + +0.2 397,847 - -3.4 397,869 - +1.1 397,898 + +0.5 397,913 + -0.2 397,921 + -2.6 398,020 + -1.1 398,024 + -2.1 398,031 - -1.8 398,151 + DVU0351 0.17 -0.5 398,151 + DVU0351 0.17 -1.7 398,152 + DVU0351 0.17 -1.1 398,195 - DVU0351 0.20 -2.3 398,257 - DVU0351 0.23 -2.0 398,287 - DVU0351 0.25 -0.7 398,295 + DVU0351 0.26 -1.7 398,516 + DVU0351 0.39 -2.0 398,630 + DVU0351 0.46 -1.8 398,638 - DVU0351 0.47 -1.4 398,671 + DVU0351 0.49 -1.8 398,824 - DVU0351 0.58 -1.6 398,824 - DVU0351 0.58 -1.3 398,829 - DVU0351 0.58 -1.1 398,975 - DVU0351 0.67 -2.4 398,985 - DVU0351 0.68 -0.6 398,990 - DVU0351 0.68 -3.2 399,008 + DVU0351 0.69 -1.0 399,013 + DVU0351 0.70 -2.2 399,016 - DVU0351 0.70 -0.4 399,041 - DVU0351 0.71 -1.6 399,141 + DVU0351 0.78 -0.3 399,240 - DVU0351 0.84 -0.8 399,285 + DVU0351 0.86 -2.5 399,293 - DVU0351 0.87 -2.2 399,463 + -0.8 399,484 - -1.6 399,580 + -1.6 399,598 - -0.9 399,698 + lpsC DVU0352 0.15 -1.1 399,698 + lpsC DVU0352 0.15 -1.6 399,708 + lpsC DVU0352 0.16 -1.3 399,713 + lpsC DVU0352 0.17 -0.4 399,713 + lpsC DVU0352 0.17 -0.7 399,713 + lpsC DVU0352 0.17 -1.6 399,721 - lpsC DVU0352 0.17 +0.3 399,721 - lpsC DVU0352 0.17 -0.9 399,787 + lpsC DVU0352 0.23 -0.9 399,788 - lpsC DVU0352 0.23 -0.8 399,888 - lpsC DVU0352 0.32 -1.1 399,911 - lpsC DVU0352 0.34 -0.6 399,913 + lpsC DVU0352 0.34 -4.0 400,085 - lpsC DVU0352 0.48 -1.1 400,102 - lpsC DVU0352 0.50 -2.0 400,139 - lpsC DVU0352 0.53 -1.6 400,187 - lpsC DVU0352 0.57 -1.4 400,204 - lpsC DVU0352 0.58 -0.8 400,209 + lpsC DVU0352 0.59 -0.6 400,209 + lpsC DVU0352 0.59 -1.3 400,217 - lpsC DVU0352 0.59 -0.8 400,217 - lpsC DVU0352 0.59 -1.9 400,243 + lpsC DVU0352 0.62 -2.5 400,262 + lpsC DVU0352 0.63 -1.0 400,314 - lpsC DVU0352 0.68 -1.2 400,317 + lpsC DVU0352 0.68 -1.3 400,386 - lpsC DVU0352 0.74 -1.1 400,389 + lpsC DVU0352 0.74 -0.7 400,407 - lpsC DVU0352 0.75 -0.1 400,422 + lpsC DVU0352 0.77 -1.0 400,427 + lpsC DVU0352 0.77 -1.4 400,454 + lpsC DVU0352 0.79 -2.0 400,490 - lpsC DVU0352 0.82 -2.1
Or see this region's nucleotide sequence