Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0271 and DVU0272 are separated by 296 nucleotides DVU0272 and DVU0273 are separated by 36 nucleotides
DVU0271: DVU0271 - response regulator (TIGR), at 313,230 to 314,720
DVU0271
DVU0272: DVU0272 - hypothetical protein (TIGR), at 315,017 to 315,112
DVU0272
DVU0273: DVU0273 - conserved hypothetical protein (TIGR), at 315,149 to 316,666
DVU0273
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 314.061 kb on - strand, within DVU0271 at 314.076 kb on + strand, within DVU0271 at 314.102 kb on - strand, within DVU0271 at 314.173 kb on - strand, within DVU0271 at 314.173 kb on - strand, within DVU0271 at 314.212 kb on + strand, within DVU0271 at 314.304 kb on + strand, within DVU0271 at 314.310 kb on - strand, within DVU0271 at 314.366 kb on - strand, within DVU0271 at 314.452 kb on - strand, within DVU0271 at 314.467 kb on + strand, within DVU0271 at 314.499 kb on + strand, within DVU0271 at 314.562 kb on + strand, within DVU0271 at 314.562 kb on + strand, within DVU0271 at 314.570 kb on - strand, within DVU0271 at 314.572 kb on - strand at 314.640 kb on - strand at 314.680 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.732 kb on - strand at 314.952 kb on - strand at 315.003 kb on + strand at 315.027 kb on - strand, within DVU0272 at 315.047 kb on + strand, within DVU0272 at 315.050 kb on - strand, within DVU0272 at 315.050 kb on - strand, within DVU0272 at 315.050 kb on - strand, within DVU0272 at 315.055 kb on - strand, within DVU0272 at 315.057 kb on - strand, within DVU0272 at 315.094 kb on + strand, within DVU0272 at 315.151 kb on + strand at 315.239 kb on - strand at 315.266 kb on + strand at 315.266 kb on + strand at 315.274 kb on - strand at 315.446 kb on + strand, within DVU0273 at 315.543 kb on + strand, within DVU0273 at 315.585 kb on + strand, within DVU0273 at 315.585 kb on + strand, within DVU0273 at 315.593 kb on - strand, within DVU0273 at 315.632 kb on + strand, within DVU0273 at 315.659 kb on - strand, within DVU0273 at 315.691 kb on + strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.783 kb on - strand, within DVU0273 at 315.886 kb on - strand, within DVU0273 at 315.886 kb on - strand, within DVU0273 at 315.907 kb on - strand, within DVU0273 at 315.921 kb on - strand, within DVU0273 at 315.949 kb on + strand, within DVU0273 at 315.965 kb on - strand, within DVU0273 at 315.967 kb on + strand, within DVU0273 at 315.975 kb on - strand, within DVU0273 at 315.982 kb on - strand, within DVU0273 at 315.999 kb on - strand, within DVU0273
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 314,061 - DVU0271 0.56 -0.7 314,076 + DVU0271 0.57 -0.5 314,102 - DVU0271 0.58 +0.3 314,173 - DVU0271 0.63 +0.0 314,173 - DVU0271 0.63 +0.9 314,212 + DVU0271 0.66 -2.8 314,304 + DVU0271 0.72 -1.6 314,310 - DVU0271 0.72 -1.4 314,366 - DVU0271 0.76 -0.4 314,452 - DVU0271 0.82 -2.0 314,467 + DVU0271 0.83 -0.5 314,499 + DVU0271 0.85 +1.4 314,562 + DVU0271 0.89 -0.4 314,562 + DVU0271 0.89 -0.1 314,570 - DVU0271 0.90 -0.5 314,572 - +0.3 314,640 - -0.1 314,680 + -0.4 314,714 + -0.3 314,714 + -0.6 314,714 + -0.9 314,714 + +0.1 314,714 + +0.7 314,714 + -2.3 314,722 - -0.2 314,722 - -2.1 314,722 - +0.3 314,722 - -0.7 314,722 - +0.2 314,722 - -0.2 314,722 - -0.9 314,722 - -1.0 314,722 - -0.0 314,722 - -0.6 314,722 - -0.3 314,732 - +0.6 314,952 - +1.5 315,003 + +0.1 315,027 - DVU0272 0.10 -0.0 315,047 + DVU0272 0.31 +1.0 315,050 - DVU0272 0.34 +0.0 315,050 - DVU0272 0.34 -0.1 315,050 - DVU0272 0.34 +0.7 315,055 - DVU0272 0.40 -0.9 315,057 - DVU0272 0.42 +0.3 315,094 + DVU0272 0.80 +0.5 315,151 + -1.2 315,239 - -0.9 315,266 + -0.1 315,266 + +0.3 315,274 - -0.6 315,446 + DVU0273 0.20 -0.1 315,543 + DVU0273 0.26 -0.9 315,585 + DVU0273 0.29 -1.8 315,585 + DVU0273 0.29 -0.8 315,593 - DVU0273 0.29 +0.0 315,632 + DVU0273 0.32 -0.4 315,659 - DVU0273 0.34 +0.1 315,691 + DVU0273 0.36 +1.2 315,699 - DVU0273 0.36 -1.2 315,699 - DVU0273 0.36 +0.4 315,699 - DVU0273 0.36 -1.5 315,699 - DVU0273 0.36 +0.3 315,783 - DVU0273 0.42 -0.0 315,886 - DVU0273 0.49 +0.5 315,886 - DVU0273 0.49 -0.1 315,907 - DVU0273 0.50 +0.7 315,921 - DVU0273 0.51 +1.1 315,949 + DVU0273 0.53 -0.6 315,965 - DVU0273 0.54 -0.1 315,967 + DVU0273 0.54 -0.6 315,975 - DVU0273 0.54 -0.8 315,982 - DVU0273 0.55 +1.0 315,999 - DVU0273 0.56 +0.6
Or see this region's nucleotide sequence