Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oppD and oppC are separated by 2 nucleotides oppC and DVU0168 are separated by 1 nucleotides DVU0168 and DVU0169 are separated by 169 nucleotides
DVU0166: oppD - oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR), at 206,374 to 207,360
oppD
DVU0167: oppC - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 207,363 to 208,283
oppC
DVU0168: DVU0168 - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 208,285 to 209,262
DVU0168
DVU0169: DVU0169 - oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein (TIGR), at 209,432 to 210,994
DVU0169
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1
2
3 at 207.377 kb on + strand at 207.416 kb on + strand at 207.424 kb on - strand at 207.424 kb on - strand at 207.502 kb on + strand, within oppC at 207.719 kb on + strand, within oppC at 207.745 kb on + strand, within oppC at 208.020 kb on - strand, within oppC at 208.186 kb on + strand, within oppC at 208.272 kb on - strand at 208.438 kb on + strand, within DVU0168 at 208.498 kb on + strand, within DVU0168 at 208.501 kb on - strand, within DVU0168 at 208.546 kb on + strand, within DVU0168 at 208.630 kb on - strand, within DVU0168 at 208.639 kb on + strand, within DVU0168 at 208.718 kb on + strand, within DVU0168 at 208.757 kb on + strand, within DVU0168 at 208.889 kb on + strand, within DVU0168 at 208.915 kb on - strand, within DVU0168 at 209.050 kb on - strand, within DVU0168 at 209.068 kb on + strand, within DVU0168 at 209.125 kb on - strand, within DVU0168 at 209.135 kb on - strand, within DVU0168 at 209.135 kb on - strand, within DVU0168 at 209.232 kb on + strand at 209.240 kb on - strand at 209.253 kb on + strand at 209.283 kb on - strand at 209.460 kb on + strand at 209.484 kb on + strand at 209.514 kb on + strand at 209.529 kb on + strand at 209.534 kb on + strand at 209.537 kb on - strand at 209.558 kb on + strand at 209.566 kb on - strand at 209.566 kb on - strand at 209.566 kb on - strand at 209.572 kb on + strand at 209.582 kb on + strand at 209.613 kb on + strand, within DVU0169 at 209.638 kb on + strand, within DVU0169 at 209.670 kb on + strand, within DVU0169 at 209.675 kb on + strand, within DVU0169 at 209.699 kb on + strand, within DVU0169 at 209.724 kb on - strand, within DVU0169 at 209.774 kb on - strand, within DVU0169 at 209.799 kb on + strand, within DVU0169 at 209.812 kb on - strand, within DVU0169 at 209.822 kb on + strand, within DVU0169 at 209.823 kb on + strand, within DVU0169 at 209.823 kb on + strand, within DVU0169 at 209.823 kb on + strand, within DVU0169 at 209.823 kb on + strand, within DVU0169 at 209.823 kb on + strand, within DVU0169 at 209.823 kb on + strand, within DVU0169 at 209.830 kb on + strand, within DVU0169 at 209.831 kb on - strand, within DVU0169 at 209.831 kb on - strand, within DVU0169 at 209.831 kb on - strand, within DVU0169 at 209.831 kb on - strand, within DVU0169 at 209.831 kb on - strand, within DVU0169 at 209.836 kb on + strand, within DVU0169 at 209.844 kb on - strand, within DVU0169 at 209.898 kb on + strand, within DVU0169 at 210.051 kb on + strand, within DVU0169 at 210.051 kb on + strand, within DVU0169 at 210.051 kb on + strand, within DVU0169 at 210.246 kb on + strand, within DVU0169 at 210.261 kb on + strand, within DVU0169
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 207,377 + -0.1 207,416 + +1.0 207,424 - +0.5 207,424 - +0.7 207,502 + oppC DVU0167 0.15 -0.2 207,719 + oppC DVU0167 0.39 +0.8 207,745 + oppC DVU0167 0.41 +0.2 208,020 - oppC DVU0167 0.71 -0.3 208,186 + oppC DVU0167 0.89 -0.5 208,272 - +0.7 208,438 + DVU0168 0.16 +0.6 208,498 + DVU0168 0.22 +0.2 208,501 - DVU0168 0.22 +0.2 208,546 + DVU0168 0.27 +0.5 208,630 - DVU0168 0.35 -0.0 208,639 + DVU0168 0.36 +1.2 208,718 + DVU0168 0.44 +0.1 208,757 + DVU0168 0.48 -0.3 208,889 + DVU0168 0.62 -0.1 208,915 - DVU0168 0.64 -0.2 209,050 - DVU0168 0.78 +0.4 209,068 + DVU0168 0.80 +0.6 209,125 - DVU0168 0.86 +0.1 209,135 - DVU0168 0.87 +0.8 209,135 - DVU0168 0.87 -0.2 209,232 + -0.9 209,240 - +1.6 209,253 + -0.4 209,283 - -0.0 209,460 + -0.6 209,484 + -0.4 209,514 + -0.4 209,529 + +0.2 209,534 + -0.2 209,537 - +0.7 209,558 + -1.5 209,566 - -0.4 209,566 - +0.1 209,566 - +2.2 209,572 + -0.1 209,582 + -0.6 209,613 + DVU0169 0.12 -0.6 209,638 + DVU0169 0.13 -0.5 209,670 + DVU0169 0.15 -0.1 209,675 + DVU0169 0.16 -0.9 209,699 + DVU0169 0.17 +1.2 209,724 - DVU0169 0.19 -0.6 209,774 - DVU0169 0.22 -0.1 209,799 + DVU0169 0.23 -0.3 209,812 - DVU0169 0.24 -0.4 209,822 + DVU0169 0.25 -0.3 209,823 + DVU0169 0.25 +0.1 209,823 + DVU0169 0.25 -0.3 209,823 + DVU0169 0.25 +0.8 209,823 + DVU0169 0.25 +0.8 209,823 + DVU0169 0.25 -0.0 209,823 + DVU0169 0.25 +1.4 209,830 + DVU0169 0.25 +0.0 209,831 - DVU0169 0.26 -0.4 209,831 - DVU0169 0.26 +1.2 209,831 - DVU0169 0.26 +0.5 209,831 - DVU0169 0.26 +0.2 209,831 - DVU0169 0.26 +0.3 209,836 + DVU0169 0.26 +0.3 209,844 - DVU0169 0.26 +0.4 209,898 + DVU0169 0.30 +0.2 210,051 + DVU0169 0.40 +0.5 210,051 + DVU0169 0.40 +0.5 210,051 + DVU0169 0.40 +0.3 210,246 + DVU0169 0.52 -0.4 210,261 + DVU0169 0.53 +2.9
Or see this region's nucleotide sequence