Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lgt and DVU0016 are separated by 139 nucleotides DVU0016 and tRNA-Ala are separated by 55 nucleotides tRNA-Ala and DVU0018 are separated by 165 nucleotides
DVU0015: lgt - prolipoprotein diacylglyceryl transferase (TIGR), at 18,804 to 19,595
lgt
DVU0016: DVU0016 - hypothetical protein (TIGR), at 19,735 to 19,839
DVU0016
DVU_tRNA-Ala-1: tRNA-Ala - tRNA with anticodon GGC for Ala (VIMSS-AUTO), at 19,895 to 19,970
tRNA-Ala
DVU0018: DVU0018 - methyl-accepting chemotaxis protein, putative (TIGR), at 20,136 to 22,385
DVU0018
Position (kb) 19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 18.747 kb on - strand at 18.811 kb on + strand at 19.630 kb on + strand at 19.688 kb on + strand at 19.696 kb on - strand at 19.698 kb on + strand at 19.711 kb on + strand at 19.719 kb on - strand at 19.719 kb on - strand at 19.719 kb on - strand at 19.766 kb on - strand, within DVU0016 at 19.784 kb on - strand, within DVU0016 at 20.042 kb on + strand at 20.051 kb on - strand at 20.052 kb on - strand at 20.134 kb on - strand at 20.141 kb on - strand at 20.286 kb on + strand at 20.289 kb on - strand at 20.315 kb on - strand at 20.326 kb on + strand at 20.359 kb on - strand at 20.360 kb on + strand at 20.367 kb on + strand, within DVU0018 at 20.546 kb on + strand, within DVU0018 at 20.590 kb on - strand, within DVU0018 at 20.596 kb on - strand, within DVU0018 at 20.621 kb on + strand, within DVU0018 at 20.621 kb on + strand, within DVU0018 at 20.627 kb on + strand, within DVU0018 at 20.627 kb on + strand, within DVU0018 at 20.629 kb on - strand, within DVU0018 at 20.629 kb on - strand, within DVU0018 at 20.660 kb on + strand, within DVU0018 at 20.660 kb on + strand, within DVU0018 at 20.668 kb on - strand, within DVU0018 at 20.668 kb on - strand, within DVU0018 at 20.668 kb on - strand, within DVU0018 at 20.720 kb on + strand, within DVU0018 at 20.720 kb on + strand, within DVU0018 at 20.756 kb on + strand, within DVU0018 at 20.836 kb on + strand, within DVU0018
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 18,747 - +0.9 18,811 + -1.4 19,630 + +0.4 19,688 + -1.0 19,696 - +0.6 19,698 + -0.7 19,711 + -0.0 19,719 - -0.7 19,719 - -0.1 19,719 - +0.1 19,766 - DVU0016 0.30 +0.1 19,784 - DVU0016 0.47 +0.7 20,042 + -0.8 20,051 - -0.2 20,052 - +0.1 20,134 - -0.4 20,141 - -0.1 20,286 + -0.4 20,289 - -1.2 20,315 - -0.3 20,326 + +1.2 20,359 - +0.2 20,360 + -1.4 20,367 + DVU0018 0.10 -0.3 20,546 + DVU0018 0.18 -0.8 20,590 - DVU0018 0.20 -1.3 20,596 - DVU0018 0.20 -0.6 20,621 + DVU0018 0.22 -0.3 20,621 + DVU0018 0.22 -0.6 20,627 + DVU0018 0.22 +1.9 20,627 + DVU0018 0.22 -0.6 20,629 - DVU0018 0.22 +0.3 20,629 - DVU0018 0.22 +0.2 20,660 + DVU0018 0.23 -0.4 20,660 + DVU0018 0.23 -3.8 20,668 - DVU0018 0.24 -0.1 20,668 - DVU0018 0.24 -0.4 20,668 - DVU0018 0.24 +0.1 20,720 + DVU0018 0.26 +1.6 20,720 + DVU0018 0.26 +0.8 20,756 + DVU0018 0.28 -0.2 20,836 + DVU0018 0.31 +0.7
Or see this region's nucleotide sequence