Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3336

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoLS4 with L-Cysteine 5mM as nutrient
3,509,450	+		DVU3335	0.48	+0.0
3,509,450	+		DVU3335	0.48	-0.4
3,509,464	-		DVU3335	0.48	-0.5
3,509,524	-		DVU3335	0.52	-0.2
3,509,533	+		DVU3335	0.52	-0.7
3,509,547	+		DVU3335	0.53	-4.5
3,509,609	+		DVU3335	0.56	+0.4
3,509,632	+		DVU3335	0.58	-2.1
3,509,699	+		DVU3335	0.62	-0.5
3,509,772	-		DVU3335	0.66	-1.5
3,509,810	+		DVU3335	0.68	+0.2
3,509,810	+		DVU3335	0.68	+0.7
3,509,818	-		DVU3335	0.68	-0.2
3,509,968	-		DVU3335	0.77	-0.6
3,510,028	-		DVU3335	0.80	+0.9
3,510,033	-		DVU3335	0.80	-0.4
3,510,052	-		DVU3335	0.81	+0.2
3,510,052	-		DVU3335	0.81	+0.2
3,510,106	-		DVU3335	0.84	+0.6
3,510,135	+		DVU3335	0.86	-0.0
3,510,154	+		DVU3335	0.87	+0.2
3,510,156	+		DVU3335	0.87	-0.4
3,510,156	+		DVU3335	0.87	+0.3
3,510,156	+		DVU3335	0.87	-0.8
3,510,156	+		DVU3335	0.87	+0.2
3,510,162	-		DVU3335	0.87	-0.6
3,510,171	+		DVU3335	0.88	-0.5
3,510,237	-				-0.4
3,510,238	+				+0.2
3,510,255	+				+1.7
3,510,293	+				+0.2
3,510,476	+				+0.6
3,510,601	+	kdpD	DVU3336	0.19	-0.9
3,510,627	-	kdpD	DVU3336	0.22	+3.2
3,510,638	-	kdpD	DVU3336	0.23	-0.5
3,510,653	-	kdpD	DVU3336	0.24	-1.4
3,510,700	+	kdpD	DVU3336	0.28	-1.0
3,510,708	+	kdpD	DVU3336	0.29	+1.0
3,510,720	-	kdpD	DVU3336	0.30	-2.0
3,510,723	-	kdpD	DVU3336	0.30	-1.8
3,510,778	-	kdpD	DVU3336	0.35	+0.4
3,510,788	-	kdpD	DVU3336	0.36	-0.8
3,510,790	-	kdpD	DVU3336	0.36	-0.9
3,510,847	+	kdpD	DVU3336	0.41	-0.4
3,510,881	+	kdpD	DVU3336	0.44	-0.8
3,510,889	-	kdpD	DVU3336	0.45	-1.8
3,510,889	-	kdpD	DVU3336	0.45	-0.9
3,510,889	-	kdpD	DVU3336	0.45	+0.4
3,510,889	-	kdpD	DVU3336	0.45	-2.0
3,510,914	-	kdpD	DVU3336	0.47	+1.2
3,510,932	+	kdpD	DVU3336	0.48	-1.0
3,510,947	+	kdpD	DVU3336	0.50	-0.7
3,510,955	-	kdpD	DVU3336	0.50	-2.4
3,510,958	-	kdpD	DVU3336	0.51	+1.2
3,511,346	-	kdpD	DVU3336	0.85	+2.2
3,511,356	+	kdpD	DVU3336	0.86	-2.6
3,511,374	+	kdpD	DVU3336	0.87	-3.7
3,511,374	+	kdpD	DVU3336	0.87	-3.4
3,511,374	+	kdpD	DVU3336	0.87	+0.4
3,511,382	-	kdpD	DVU3336	0.88	-2.9
3,511,382	-	kdpD	DVU3336	0.88	-0.2
3,511,386	+	kdpD	DVU3336	0.88	-1.8
3,511,396	+	kdpD	DVU3336	0.89	-2.6
3,511,404	-	kdpD	DVU3336	0.90	-2.1
3,511,428	+				-1.4
3,511,429	+				-1.7
3,511,429	+				-2.2
3,511,434	+				-1.8
3,511,477	-				-2.2
3,511,479	+				-3.9
3,511,481	+				-2.1
3,511,554	+				-0.3
3,511,554	+				+0.2
3,511,554	+				-1.3
3,511,556	+				-0.7
3,511,562	-				-0.6
3,511,562	-				+2.2
3,511,562	-				-0.2
3,511,562	-				-0.3
3,511,585	-				+0.1
3,511,590	+				-0.3
3,511,598	-				-0.5
3,511,619	+				-1.7
3,511,734	-	kdpC	DVU3337	0.24	-0.0
3,511,750	+	kdpC	DVU3337	0.27	+0.2
3,511,750	+	kdpC	DVU3337	0.27	-0.3
3,511,750	+	kdpC	DVU3337	0.27	+0.2
3,511,750	+	kdpC	DVU3337	0.27	-0.2
3,511,750	+	kdpC	DVU3337	0.27	+0.5
3,511,750	+	kdpC	DVU3337	0.27	+0.0
3,511,771	+	kdpC	DVU3337	0.30	-0.0
3,511,784	+	kdpC	DVU3337	0.33	-0.2
3,511,784	+	kdpC	DVU3337	0.33	-0.3
3,511,792	-	kdpC	DVU3337	0.34	+0.5
3,511,792	-	kdpC	DVU3337	0.34	+0.3
3,511,839	-	kdpC	DVU3337	0.42	-0.6
3,511,839	-	kdpC	DVU3337	0.42	+0.2
3,511,861	-	kdpC	DVU3337	0.46	+1.2
3,511,975	-	kdpC	DVU3337	0.67	+0.1
3,511,979	+	kdpC	DVU3337	0.68	+0.2
3,511,992	-	kdpC	DVU3337	0.70	-0.6
3,511,993	-	kdpC	DVU3337	0.70	-0.1
3,512,005	-	kdpC	DVU3337	0.72	-0.3
3,512,028	-	kdpC	DVU3337	0.76	-0.0
3,512,047	+	kdpC	DVU3337	0.80	-0.7
3,512,055	-	kdpC	DVU3337	0.81	+0.5
3,512,055	-	kdpC	DVU3337	0.81	-0.5
3,512,055	-	kdpC	DVU3337	0.81	-0.2
3,512,057	+	kdpC	DVU3337	0.82	-0.7
3,512,057	+	kdpC	DVU3337	0.82	+0.8
3,512,065	-	kdpC	DVU3337	0.83	-0.5
3,512,070	-	kdpC	DVU3337	0.84	-0.7
3,512,083	+	kdpC	DVU3337	0.86	-0.6
3,512,135	-				+0.1
3,512,214	-				+0.3
3,512,215	+				-0.8
3,512,278	-				+0.1
3,512,312	+				+0.1
3,512,332	+				-0.1
3,512,337	+				-0.1
3,512,413	+	kdpB	DVU3338	0.12	-0.1
3,512,452	+	kdpB	DVU3338	0.14	-0.8
3,512,460	-	kdpB	DVU3338	0.14	+1.2