Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3172 and DVU3173 are separated by 195 nucleotides DVU3173 and ubiE overlap by 4 nucleotides ubiE and DVU3175 are separated by 266 nucleotides DVU3175 and DVU3176 are separated by 133 nucleotides
DVU3172: DVU3172 - hypothetical protein (TIGR), at 3,328,492 to 3,330,507
DVU3172
DVU3173: DVU3173 - hypothetical protein (TIGR), at 3,330,703 to 3,330,879
DVU3173
DVU3174: ubiE - ubiquinone/menaquinone biosynthesis methlytransferase UbiE (TIGR), at 3,330,876 to 3,331,652
ubiE
DVU3175: DVU3175 - membrane protein, putative (TIGR), at 3,331,919 to 3,332,122
DVU3175
DVU3176: DVU3176 - UDP-glucose/GDP-mannose dehydrogenase family protein (TIGR), at 3,332,256 to 3,333,578
DVU3176
Position (kb)
3330
3331
3332 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3329.880 kb on - strand, within DVU3172 at 3329.927 kb on + strand, within DVU3172 at 3329.935 kb on - strand, within DVU3172 at 3329.940 kb on + strand, within DVU3172 at 3329.950 kb on + strand, within DVU3172 at 3329.957 kb on + strand, within DVU3172 at 3329.987 kb on + strand, within DVU3172 at 3330.209 kb on + strand, within DVU3172 at 3330.212 kb on - strand, within DVU3172 at 3330.217 kb on + strand, within DVU3172 at 3330.230 kb on + strand, within DVU3172 at 3330.327 kb on - strand at 3330.346 kb on + strand at 3330.419 kb on - strand at 3330.426 kb on - strand at 3330.431 kb on + strand at 3330.449 kb on - strand at 3330.537 kb on + strand at 3330.550 kb on + strand at 3330.559 kb on + strand at 3330.619 kb on + strand at 3330.632 kb on + strand at 3330.755 kb on + strand, within DVU3173 at 3331.772 kb on + strand at 3331.772 kb on + strand at 3331.799 kb on - strand at 3331.846 kb on + strand at 3331.849 kb on - strand at 3331.917 kb on + strand at 3331.917 kb on + strand at 3331.917 kb on + strand at 3331.921 kb on + strand at 3331.954 kb on + strand, within DVU3175 at 3331.985 kb on - strand, within DVU3175 at 3331.999 kb on - strand, within DVU3175 at 3332.058 kb on - strand, within DVU3175 at 3332.150 kb on + strand at 3332.158 kb on - strand at 3332.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 3,329,880 - DVU3172 0.69 -0.5 3,329,927 + DVU3172 0.71 -1.3 3,329,935 - DVU3172 0.72 -0.1 3,329,940 + DVU3172 0.72 -2.2 3,329,950 + DVU3172 0.72 -0.6 3,329,957 + DVU3172 0.73 -1.3 3,329,987 + DVU3172 0.74 -0.3 3,330,209 + DVU3172 0.85 -0.4 3,330,212 - DVU3172 0.85 -0.6 3,330,217 + DVU3172 0.86 -2.6 3,330,230 + DVU3172 0.86 -0.8 3,330,327 - -0.6 3,330,346 + -0.7 3,330,419 - +0.2 3,330,426 - -0.6 3,330,431 + -0.6 3,330,449 - -2.1 3,330,537 + -0.1 3,330,550 + +0.1 3,330,559 + +0.1 3,330,619 + -0.6 3,330,632 + -3.4 3,330,755 + DVU3173 0.29 +0.6 3,331,772 + +0.1 3,331,772 + -0.1 3,331,799 - +0.0 3,331,846 + -0.3 3,331,849 - -0.9 3,331,917 + -0.8 3,331,917 + +0.4 3,331,917 + +0.0 3,331,921 + +0.2 3,331,954 + DVU3175 0.17 -1.5 3,331,985 - DVU3175 0.32 -1.3 3,331,999 - DVU3175 0.39 -2.6 3,332,058 - DVU3175 0.68 +0.3 3,332,150 + -0.6 3,332,158 - -0.5 3,332,241 - -0.0
Or see this region's nucleotide sequence