Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3174

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3172 and DVU3173 are separated by 195 nucleotidesDVU3173 and ubiE overlap by 4 nucleotidesubiE and DVU3175 are separated by 266 nucleotidesDVU3175 and DVU3176 are separated by 133 nucleotides DVU3172: DVU3172 - hypothetical protein (TIGR), at 3,328,492 to 3,330,507 DVU3172 DVU3173: DVU3173 - hypothetical protein (TIGR), at 3,330,703 to 3,330,879 DVU3173 DVU3174: ubiE - ubiquinone/menaquinone biosynthesis methlytransferase UbiE (TIGR), at 3,330,876 to 3,331,652 ubiE DVU3175: DVU3175 - membrane protein, putative (TIGR), at 3,331,919 to 3,332,122 DVU3175 DVU3176: DVU3176 - UDP-glucose/GDP-mannose dehydrogenase family protein (TIGR), at 3,332,256 to 3,333,578 DVU3176 Position (kb) 3330 3331 3332Strain fitness (log2 ratio) -3 -2 -1 0 1at 3329.880 kb on - strand, within DVU3172at 3329.927 kb on + strand, within DVU3172at 3329.935 kb on - strand, within DVU3172at 3329.940 kb on + strand, within DVU3172at 3329.950 kb on + strand, within DVU3172at 3329.957 kb on + strand, within DVU3172at 3329.987 kb on + strand, within DVU3172at 3330.209 kb on + strand, within DVU3172at 3330.212 kb on - strand, within DVU3172at 3330.217 kb on + strand, within DVU3172at 3330.230 kb on + strand, within DVU3172at 3330.327 kb on - strandat 3330.346 kb on + strandat 3330.419 kb on - strandat 3330.426 kb on - strandat 3330.431 kb on + strandat 3330.449 kb on - strandat 3330.537 kb on + strandat 3330.550 kb on + strandat 3330.559 kb on + strandat 3330.619 kb on + strandat 3330.632 kb on + strandat 3330.755 kb on + strand, within DVU3173at 3331.772 kb on + strandat 3331.772 kb on + strandat 3331.799 kb on - strandat 3331.846 kb on + strandat 3331.849 kb on - strandat 3331.917 kb on + strandat 3331.917 kb on + strandat 3331.917 kb on + strandat 3331.921 kb on + strandat 3331.954 kb on + strand, within DVU3175at 3331.985 kb on - strand, within DVU3175at 3331.999 kb on - strand, within DVU3175at 3332.058 kb on - strand, within DVU3175at 3332.150 kb on + strandat 3332.158 kb on - strandat 3332.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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3,329,880 - DVU3172 0.69 -0.5
3,329,927 + DVU3172 0.71 -1.3
3,329,935 - DVU3172 0.72 -0.1
3,329,940 + DVU3172 0.72 -2.2
3,329,950 + DVU3172 0.72 -0.6
3,329,957 + DVU3172 0.73 -1.3
3,329,987 + DVU3172 0.74 -0.3
3,330,209 + DVU3172 0.85 -0.4
3,330,212 - DVU3172 0.85 -0.6
3,330,217 + DVU3172 0.86 -2.6
3,330,230 + DVU3172 0.86 -0.8
3,330,327 - -0.6
3,330,346 + -0.7
3,330,419 - +0.2
3,330,426 - -0.6
3,330,431 + -0.6
3,330,449 - -2.1
3,330,537 + -0.1
3,330,550 + +0.1
3,330,559 + +0.1
3,330,619 + -0.6
3,330,632 + -3.4
3,330,755 + DVU3173 0.29 +0.6
3,331,772 + +0.1
3,331,772 + -0.1
3,331,799 - +0.0
3,331,846 + -0.3
3,331,849 - -0.9
3,331,917 + -0.8
3,331,917 + +0.4
3,331,917 + +0.0
3,331,921 + +0.2
3,331,954 + DVU3175 0.17 -1.5
3,331,985 - DVU3175 0.32 -1.3
3,331,999 - DVU3175 0.39 -2.6
3,332,058 - DVU3175 0.68 +0.3
3,332,150 + -0.6
3,332,158 - -0.5
3,332,241 - -0.0

Or see this region's nucleotide sequence