Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2882

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttRNA-Arg and folC are separated by 484 nucleotidesfolC and selA are separated by 171 nucleotides DVU_tRNA-Arg-5: tRNA-Arg - tRNA with anticodon TCT for Arg (VIMSS-AUTO), at 2,977,658 to 2,977,734 tRNA-Arg DVU2882: folC - folylpolyglutamate synthase (TIGR), at 2,978,219 to 2,979,715 folC DVU2883: selA - L-seryl-tRNA selenium transferase (TIGR), at 2,979,887 to 2,981,296 selA Position (kb) 2978 2979 2980Strain fitness (log2 ratio) -1 0 1 2at 2977.321 kb on + strandat 2977.336 kb on + strandat 2977.430 kb on + strandat 2977.481 kb on - strandat 2977.511 kb on + strandat 2977.564 kb on - strandat 2977.771 kb on + strandat 2977.791 kb on + strandat 2977.801 kb on - strandat 2977.827 kb on - strandat 2977.854 kb on + strandat 2977.928 kb on + strandat 2977.943 kb on - strandat 2977.965 kb on + strandat 2978.054 kb on + strandat 2978.070 kb on - strandat 2978.098 kb on - strandat 2978.174 kb on + strandat 2978.174 kb on + strandat 2978.225 kb on - strandat 2979.752 kb on + strandat 2979.861 kb on - strandat 2979.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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2,977,321 + -0.5
2,977,336 + -0.3
2,977,430 + +0.2
2,977,481 - +0.3
2,977,511 + -0.7
2,977,564 - +0.2
2,977,771 + -0.6
2,977,791 + +2.3
2,977,801 - +0.0
2,977,827 - -0.7
2,977,854 + -1.3
2,977,928 + -0.3
2,977,943 - +0.4
2,977,965 + +0.5
2,978,054 + +0.2
2,978,070 - -0.2
2,978,098 - -0.4
2,978,174 + -0.9
2,978,174 + -0.2
2,978,225 - +0.2
2,979,752 + -1.1
2,979,861 - +0.4
2,979,861 - +0.1

Or see this region's nucleotide sequence