Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2538

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplT and rpmI are separated by 82 nucleotidesrpmI and infC are separated by 169 nucleotidesinfC and thrS are separated by 7 nucleotidesthrS and tRNA-Val are separated by 85 nucleotidestRNA-Val and DVU2539 are separated by 24 nucleotidesDVU2539 and DVU2540 are separated by 5 nucleotides DVU2535: rplT - ribosomal protein L20 (TIGR), at 2,647,904 to 2,648,257 rplT DVU2536: rpmI - ribosomal protein L35 (TIGR), at 2,648,340 to 2,648,537 rpmI DVU2537: infC - translation initiation factor IF-3 (TIGR), at 2,648,707 to 2,649,237 infC DVU2538: thrS - threonyl-tRNA synthetase (TIGR), at 2,649,245 to 2,651,179 thrS DVU_tRNA-Val-2: tRNA-Val - tRNA with anticodon GAC for Val (VIMSS-AUTO), at 2,651,265 to 2,651,339 tRNA-Val DVU2539: DVU2539 - hypothetical protein (TIGR), at 2,651,364 to 2,651,486 DVU2539 DVU2540: DVU2540 - lyase, putative (TIGR), at 2,651,492 to 2,652,634 DVU2540 Position (kb) 2649 2650 2651 2652Strain fitness (log2 ratio) -2 -1 0 1at 2648.574 kb on + strandat 2651.462 kb on + strand, within DVU2539at 2651.479 kb on + strandat 2651.529 kb on + strandat 2651.551 kb on + strandat 2651.559 kb on - strandat 2651.595 kb on - strandat 2651.611 kb on + strand, within DVU2540at 2651.617 kb on - strand, within DVU2540at 2651.634 kb on - strand, within DVU2540at 2651.634 kb on - strand, within DVU2540at 2651.720 kb on - strand, within DVU2540at 2651.732 kb on - strand, within DVU2540at 2651.742 kb on + strand, within DVU2540at 2651.778 kb on + strand, within DVU2540at 2651.811 kb on - strand, within DVU2540at 2651.829 kb on - strand, within DVU2540at 2651.843 kb on + strand, within DVU2540at 2651.870 kb on - strand, within DVU2540at 2651.920 kb on - strand, within DVU2540at 2651.946 kb on - strand, within DVU2540at 2651.948 kb on - strand, within DVU2540at 2651.957 kb on + strand, within DVU2540at 2652.009 kb on - strand, within DVU2540at 2652.091 kb on - strand, within DVU2540at 2652.139 kb on - strand, within DVU2540at 2652.165 kb on - strand, within DVU2540

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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2,648,574 + -0.1
2,651,462 + DVU2539 0.80 -0.2
2,651,479 + -0.4
2,651,529 + -0.3
2,651,551 + -0.7
2,651,559 - -0.2
2,651,595 - +1.2
2,651,611 + DVU2540 0.10 -0.5
2,651,617 - DVU2540 0.11 -0.9
2,651,634 - DVU2540 0.12 -0.6
2,651,634 - DVU2540 0.12 +0.8
2,651,720 - DVU2540 0.20 +0.0
2,651,732 - DVU2540 0.21 +0.8
2,651,742 + DVU2540 0.22 -0.5
2,651,778 + DVU2540 0.25 +1.5
2,651,811 - DVU2540 0.28 -1.9
2,651,829 - DVU2540 0.29 -0.4
2,651,843 + DVU2540 0.31 +0.8
2,651,870 - DVU2540 0.33 -0.0
2,651,920 - DVU2540 0.37 +0.1
2,651,946 - DVU2540 0.40 +0.3
2,651,948 - DVU2540 0.40 +0.2
2,651,957 + DVU2540 0.41 +1.6
2,652,009 - DVU2540 0.45 +0.5
2,652,091 - DVU2540 0.52 -0.2
2,652,139 - DVU2540 0.57 +1.0
2,652,165 - DVU2540 0.59 -0.5

Or see this region's nucleotide sequence