Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2444

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2443 and flaB3 are separated by 180 nucleotidesflaB3 and panB are separated by 258 nucleotides DVU2443: DVU2443 - conserved hypothetical protein (TIGR), at 2,548,554 to 2,549,180 DVU2443 DVU2444: flaB3 - flagellin (TIGR), at 2,549,361 to 2,550,254 flaB3 DVU2446: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (TIGR), at 2,550,513 to 2,551,436 panB Position (kb) 2549 2550 2551Strain fitness (log2 ratio) -2 -1 0 1 2at 2548.443 kb on - strandat 2548.481 kb on - strandat 2548.568 kb on + strandat 2548.581 kb on - strandat 2548.582 kb on - strandat 2548.590 kb on + strandat 2548.603 kb on + strandat 2548.618 kb on + strand, within DVU2443at 2548.618 kb on + strand, within DVU2443at 2548.666 kb on + strand, within DVU2443at 2548.666 kb on + strand, within DVU2443at 2548.672 kb on - strand, within DVU2443at 2548.707 kb on - strand, within DVU2443at 2548.714 kb on - strand, within DVU2443at 2548.770 kb on - strand, within DVU2443at 2548.799 kb on + strand, within DVU2443at 2548.895 kb on + strand, within DVU2443at 2548.958 kb on - strand, within DVU2443at 2548.963 kb on - strand, within DVU2443at 2548.965 kb on - strand, within DVU2443at 2549.070 kb on - strand, within DVU2443at 2549.195 kb on - strandat 2549.262 kb on + strandat 2549.321 kb on - strandat 2549.370 kb on + strandat 2549.421 kb on - strandat 2549.523 kb on - strand, within flaB3at 2549.762 kb on - strand, within flaB3at 2549.836 kb on + strand, within flaB3at 2549.846 kb on + strand, within flaB3at 2549.947 kb on - strand, within flaB3at 2550.064 kb on + strand, within flaB3at 2550.175 kb on + strandat 2550.180 kb on - strandat 2550.360 kb on - strandat 2550.370 kb on - strandat 2550.376 kb on + strandat 2550.497 kb on - strandat 2550.513 kb on - strandat 2550.533 kb on + strandat 2550.561 kb on + strandat 2550.562 kb on + strandat 2550.570 kb on - strandat 2550.570 kb on - strandat 2550.571 kb on - strandat 2550.604 kb on - strandat 2550.630 kb on + strand, within panBat 2550.638 kb on - strand, within panBat 2550.782 kb on - strand, within panBat 2550.804 kb on - strand, within panBat 2550.809 kb on - strand, within panBat 2550.850 kb on - strand, within panBat 2550.852 kb on + strand, within panBat 2550.854 kb on + strand, within panBat 2550.854 kb on + strand, within panBat 2550.860 kb on - strand, within panBat 2550.862 kb on - strand, within panBat 2550.862 kb on - strand, within panBat 2550.862 kb on - strand, within panBat 2550.862 kb on - strand, within panBat 2550.940 kb on - strand, within panBat 2551.020 kb on + strand, within panBat 2551.103 kb on + strand, within panBat 2551.219 kb on + strand, within panBat 2551.254 kb on + strand, within panB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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2,548,443 - -0.2
2,548,481 - +1.4
2,548,568 + +2.4
2,548,581 - +0.8
2,548,582 - -0.2
2,548,590 + +0.0
2,548,603 + -1.6
2,548,618 + DVU2443 0.10 -0.0
2,548,618 + DVU2443 0.10 -1.1
2,548,666 + DVU2443 0.18 -0.2
2,548,666 + DVU2443 0.18 -0.9
2,548,672 - DVU2443 0.19 +0.4
2,548,707 - DVU2443 0.24 +0.2
2,548,714 - DVU2443 0.26 +0.2
2,548,770 - DVU2443 0.34 +0.8
2,548,799 + DVU2443 0.39 -2.0
2,548,895 + DVU2443 0.54 -0.1
2,548,958 - DVU2443 0.64 -1.0
2,548,963 - DVU2443 0.65 +0.8
2,548,965 - DVU2443 0.66 +0.8
2,549,070 - DVU2443 0.82 -0.1
2,549,195 - +0.5
2,549,262 + -0.2
2,549,321 - +1.4
2,549,370 + +1.4
2,549,421 - +1.2
2,549,523 - flaB3 DVU2444 0.18 -0.2
2,549,762 - flaB3 DVU2444 0.45 -0.4
2,549,836 + flaB3 DVU2444 0.53 +1.1
2,549,846 + flaB3 DVU2444 0.54 +0.8
2,549,947 - flaB3 DVU2444 0.66 -1.1
2,550,064 + flaB3 DVU2444 0.79 -0.1
2,550,175 + +0.6
2,550,180 - -0.3
2,550,360 - +1.0
2,550,370 - -0.7
2,550,376 + -0.9
2,550,497 - -0.2
2,550,513 - +0.1
2,550,533 + -1.2
2,550,561 + -0.8
2,550,562 + -0.0
2,550,570 - -0.0
2,550,570 - -0.3
2,550,571 - -0.2
2,550,604 - +1.0
2,550,630 + panB DVU2446 0.13 -1.0
2,550,638 - panB DVU2446 0.14 +0.6
2,550,782 - panB DVU2446 0.29 -1.6
2,550,804 - panB DVU2446 0.31 +1.2
2,550,809 - panB DVU2446 0.32 -0.4
2,550,850 - panB DVU2446 0.36 -0.3
2,550,852 + panB DVU2446 0.37 -0.8
2,550,854 + panB DVU2446 0.37 +1.7
2,550,854 + panB DVU2446 0.37 -0.7
2,550,860 - panB DVU2446 0.38 -1.6
2,550,862 - panB DVU2446 0.38 +0.1
2,550,862 - panB DVU2446 0.38 -0.4
2,550,862 - panB DVU2446 0.38 -1.0
2,550,862 - panB DVU2446 0.38 -0.6
2,550,940 - panB DVU2446 0.46 +0.6
2,551,020 + panB DVU2446 0.55 -0.8
2,551,103 + panB DVU2446 0.64 +0.1
2,551,219 + panB DVU2446 0.76 -0.3
2,551,254 + panB DVU2446 0.80 -0.7

Or see this region's nucleotide sequence