Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2096

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiG and thiS overlap by 1 nucleotidesthiS and DVU2096 are separated by 525 nucleotidesDVU2096 and DVU2097 are separated by 269 nucleotides DVU2094: thiG - thiG protein (TIGR), at 2,183,451 to 2,184,248 thiG DVU2095: thiS - thiamine biosynthesis protein ThiS (TIGR), at 2,184,248 to 2,184,448 thiS DVU2096: DVU2096 - hypothetical protein (TIGR), at 2,184,974 to 2,185,066 DVU2096 DVU2097: DVU2097 - transcriptional regulator, putative (TIGR), at 2,185,336 to 2,186,007 DVU2097 Position (kb) 2184 2185 2186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2183.983 kb on + strand, within thiGat 2184.212 kb on + strandat 2184.252 kb on - strandat 2184.282 kb on + strand, within thiSat 2184.290 kb on - strand, within thiSat 2184.290 kb on - strand, within thiSat 2184.336 kb on + strand, within thiSat 2184.380 kb on + strand, within thiSat 2184.397 kb on + strand, within thiSat 2184.405 kb on - strand, within thiSat 2184.512 kb on - strandat 2184.543 kb on - strandat 2184.566 kb on + strandat 2184.594 kb on - strandat 2184.667 kb on + strandat 2184.673 kb on + strandat 2184.830 kb on - strandat 2184.847 kb on - strandat 2184.930 kb on - strandat 2185.019 kb on + strand, within DVU2096at 2185.075 kb on - strandat 2185.182 kb on - strandat 2185.190 kb on - strandat 2185.302 kb on + strandat 2185.332 kb on - strandat 2185.333 kb on - strandat 2185.342 kb on - strandat 2185.749 kb on - strand, within DVU2097at 2185.774 kb on - strand, within DVU2097at 2185.898 kb on + strand, within DVU2097at 2186.023 kb on + strandat 2186.049 kb on + strandat 2186.049 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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2,183,983 + thiG DVU2094 0.67 -2.3
2,184,212 + -0.8
2,184,252 - -4.5
2,184,282 + thiS DVU2095 0.17 -2.6
2,184,290 - thiS DVU2095 0.21 -1.3
2,184,290 - thiS DVU2095 0.21 -2.0
2,184,336 + thiS DVU2095 0.44 -1.6
2,184,380 + thiS DVU2095 0.66 -2.7
2,184,397 + thiS DVU2095 0.74 -2.5
2,184,405 - thiS DVU2095 0.78 -2.5
2,184,512 - +0.1
2,184,543 - -0.0
2,184,566 + -1.2
2,184,594 - -2.5
2,184,667 + -0.6
2,184,673 + +0.2
2,184,830 - -0.1
2,184,847 - -0.8
2,184,930 - -0.1
2,185,019 + DVU2096 0.48 +0.4
2,185,075 - -0.3
2,185,182 - -0.2
2,185,190 - -1.3
2,185,302 + -0.6
2,185,332 - +0.5
2,185,333 - +0.2
2,185,342 - -0.0
2,185,749 - DVU2097 0.61 +0.2
2,185,774 - DVU2097 0.65 +0.7
2,185,898 + DVU2097 0.84 -0.5
2,186,023 + +0.1
2,186,049 + +0.0
2,186,049 + +0.4

Or see this region's nucleotide sequence