Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metG and DVU2057 are separated by 229 nucleotides DVU2057 and DVU2058 are separated by 205 nucleotides DVU2058 and DVU2059 are separated by 14 nucleotides
DVU2055: metG - methionyl-tRNA synthetase (TIGR), at 2,131,143 to 2,133,134
metG
DVU2057: DVU2057 - conserved hypothetical protein (TIGR), at 2,133,364 to 2,134,827
DVU2057
DVU2058: DVU2058 - HDIG domain protein (TIGR), at 2,135,033 to 2,135,596
DVU2058
DVU2059: DVU2059 - glycosyl transferase, group 2 family protein (TIGR), at 2,135,611 to 2,136,603
DVU2059
Position (kb)
2133
2134
2135 Strain fitness (log2 ratio)
-2
-1
0
1 at 2133.185 kb on - strand at 2133.240 kb on + strand at 2133.291 kb on - strand at 2133.296 kb on + strand at 2133.449 kb on + strand at 2133.514 kb on - strand, within DVU2057 at 2133.531 kb on - strand, within DVU2057 at 2133.558 kb on + strand, within DVU2057 at 2133.609 kb on + strand, within DVU2057 at 2133.647 kb on - strand, within DVU2057 at 2133.662 kb on + strand, within DVU2057 at 2133.734 kb on + strand, within DVU2057 at 2133.735 kb on + strand, within DVU2057 at 2134.699 kb on - strand at 2135.038 kb on + strand at 2135.225 kb on + strand, within DVU2058 at 2135.225 kb on + strand, within DVU2058 at 2135.320 kb on + strand, within DVU2058 at 2135.335 kb on + strand, within DVU2058 at 2135.343 kb on - strand, within DVU2058 at 2135.350 kb on + strand, within DVU2058 at 2135.350 kb on + strand, within DVU2058 at 2135.353 kb on - strand, within DVU2058 at 2135.358 kb on - strand, within DVU2058 at 2135.358 kb on - strand, within DVU2058 at 2135.435 kb on - strand, within DVU2058 at 2135.597 kb on + strand at 2135.616 kb on + strand at 2135.779 kb on + strand, within DVU2059
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 2,133,185 - -0.4 2,133,240 + -0.1 2,133,291 - +0.4 2,133,296 + +0.1 2,133,449 + +1.0 2,133,514 - DVU2057 0.10 -0.6 2,133,531 - DVU2057 0.11 +0.0 2,133,558 + DVU2057 0.13 +1.3 2,133,609 + DVU2057 0.17 -1.7 2,133,647 - DVU2057 0.19 +0.2 2,133,662 + DVU2057 0.20 +0.3 2,133,734 + DVU2057 0.25 +1.3 2,133,735 + DVU2057 0.25 +0.3 2,134,699 - +0.7 2,135,038 + -0.3 2,135,225 + DVU2058 0.34 -0.3 2,135,225 + DVU2058 0.34 +0.7 2,135,320 + DVU2058 0.51 -0.8 2,135,335 + DVU2058 0.54 -0.1 2,135,343 - DVU2058 0.55 +0.7 2,135,350 + DVU2058 0.56 -2.7 2,135,350 + DVU2058 0.56 -0.3 2,135,353 - DVU2058 0.57 +0.6 2,135,358 - DVU2058 0.58 +0.1 2,135,358 - DVU2058 0.58 +1.1 2,135,435 - DVU2058 0.71 -0.2 2,135,597 + -0.2 2,135,616 + -0.2 2,135,779 + DVU2059 0.17 +0.3
Or see this region's nucleotide sequence