Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2057

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmetG and DVU2057 are separated by 229 nucleotidesDVU2057 and DVU2058 are separated by 205 nucleotidesDVU2058 and DVU2059 are separated by 14 nucleotides DVU2055: metG - methionyl-tRNA synthetase (TIGR), at 2,131,143 to 2,133,134 metG DVU2057: DVU2057 - conserved hypothetical protein (TIGR), at 2,133,364 to 2,134,827 DVU2057 DVU2058: DVU2058 - HDIG domain protein (TIGR), at 2,135,033 to 2,135,596 DVU2058 DVU2059: DVU2059 - glycosyl transferase, group 2 family protein (TIGR), at 2,135,611 to 2,136,603 DVU2059 Position (kb) 2133 2134 2135Strain fitness (log2 ratio) -2 -1 0 1at 2133.185 kb on - strandat 2133.240 kb on + strandat 2133.291 kb on - strandat 2133.296 kb on + strandat 2133.449 kb on + strandat 2133.514 kb on - strand, within DVU2057at 2133.531 kb on - strand, within DVU2057at 2133.558 kb on + strand, within DVU2057at 2133.609 kb on + strand, within DVU2057at 2133.647 kb on - strand, within DVU2057at 2133.662 kb on + strand, within DVU2057at 2133.734 kb on + strand, within DVU2057at 2133.735 kb on + strand, within DVU2057at 2134.699 kb on - strandat 2135.038 kb on + strandat 2135.225 kb on + strand, within DVU2058at 2135.225 kb on + strand, within DVU2058at 2135.320 kb on + strand, within DVU2058at 2135.335 kb on + strand, within DVU2058at 2135.343 kb on - strand, within DVU2058at 2135.350 kb on + strand, within DVU2058at 2135.350 kb on + strand, within DVU2058at 2135.353 kb on - strand, within DVU2058at 2135.358 kb on - strand, within DVU2058at 2135.358 kb on - strand, within DVU2058at 2135.435 kb on - strand, within DVU2058at 2135.597 kb on + strandat 2135.616 kb on + strandat 2135.779 kb on + strand, within DVU2059

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
remove
2,133,185 - -0.4
2,133,240 + -0.1
2,133,291 - +0.4
2,133,296 + +0.1
2,133,449 + +1.0
2,133,514 - DVU2057 0.10 -0.6
2,133,531 - DVU2057 0.11 +0.0
2,133,558 + DVU2057 0.13 +1.3
2,133,609 + DVU2057 0.17 -1.7
2,133,647 - DVU2057 0.19 +0.2
2,133,662 + DVU2057 0.20 +0.3
2,133,734 + DVU2057 0.25 +1.3
2,133,735 + DVU2057 0.25 +0.3
2,134,699 - +0.7
2,135,038 + -0.3
2,135,225 + DVU2058 0.34 -0.3
2,135,225 + DVU2058 0.34 +0.7
2,135,320 + DVU2058 0.51 -0.8
2,135,335 + DVU2058 0.54 -0.1
2,135,343 - DVU2058 0.55 +0.7
2,135,350 + DVU2058 0.56 -2.7
2,135,350 + DVU2058 0.56 -0.3
2,135,353 - DVU2058 0.57 +0.6
2,135,358 - DVU2058 0.58 +0.1
2,135,358 - DVU2058 0.58 +1.1
2,135,435 - DVU2058 0.71 -0.2
2,135,597 + -0.2
2,135,616 + -0.2
2,135,779 + DVU2059 0.17 +0.3

Or see this region's nucleotide sequence