Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1913

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1911 and DVU1912 are separated by 12 nucleotidesDVU1912 and DVU1913 are separated by 58 nucleotidesDVU1913 and DVU1914 are separated by 14 nucleotides DVU1911: DVU1911 - CBS domain protein (TIGR), at 1,986,678 to 1,987,130 DVU1911 DVU1912: DVU1912 - conserved hypothetical protein TIGR00150 (TIGR), at 1,987,143 to 1,987,631 DVU1912 DVU1913: DVU1913 - aspartate kinase, monofunctional class (TIGR), at 1,987,690 to 1,988,916 DVU1913 DVU1914: DVU1914 - (R)-citramalate synthase (EC 2.3.3.21) (from data), at 1,988,931 to 1,990,547 DVU1914 Position (kb) 1987 1988 1989Strain fitness (log2 ratio) -3 -2 -1 0 1at 1987.614 kb on - strandat 1987.616 kb on - strandat 1987.625 kb on + strandat 1987.625 kb on + strandat 1988.910 kb on + strandat 1988.980 kb on + strandat 1989.019 kb on + strandat 1989.047 kb on - strandat 1989.056 kb on + strandat 1989.245 kb on - strand, within DVU1914at 1989.281 kb on - strand, within DVU1914at 1989.434 kb on + strand, within DVU1914at 1989.456 kb on - strand, within DVU1914at 1989.604 kb on - strand, within DVU1914at 1989.617 kb on + strand, within DVU1914at 1989.642 kb on + strand, within DVU1914at 1989.791 kb on + strand, within DVU1914at 1989.843 kb on + strand, within DVU1914at 1989.878 kb on - strand, within DVU1914at 1989.913 kb on + strand, within DVU1914

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,987,614 - -1.1
1,987,616 - -0.5
1,987,625 + -0.1
1,987,625 + -0.1
1,988,910 + -1.0
1,988,980 + -2.1
1,989,019 + -1.4
1,989,047 - -1.8
1,989,056 + -2.8
1,989,245 - DVU1914 0.19 -2.0
1,989,281 - DVU1914 0.22 -2.1
1,989,434 + DVU1914 0.31 -3.0
1,989,456 - DVU1914 0.32 +0.5
1,989,604 - DVU1914 0.42 -2.0
1,989,617 + DVU1914 0.42 -2.3
1,989,642 + DVU1914 0.44 -2.5
1,989,791 + DVU1914 0.53 +0.9
1,989,843 + DVU1914 0.56 -2.3
1,989,878 - DVU1914 0.59 -2.4
1,989,913 + DVU1914 0.61 -0.4

Or see this region's nucleotide sequence