Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1842

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfbp and DVU1842 are separated by 92 nucleotidesDVU1842 and DVU1843 are separated by 45 nucleotidesDVU1843 and DVU1844 overlap by 17 nucleotides DVU1841: fbp - fructose-1,6-bisphosphatase (TIGR), at 1,911,438 to 1,912,451 fbp DVU1842: DVU1842 - lipoprotein, putative (TIGR), at 1,912,544 to 1,913,500 DVU1842 DVU1843: DVU1843 - hypothetical protein (TIGR), at 1,913,546 to 1,914,499 DVU1843 DVU1844: DVU1844 - septum formation initiator family protein (TIGR), at 1,914,483 to 1,914,812 DVU1844 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1 2at 1911.766 kb on + strand, within fbpat 1911.774 kb on - strand, within fbpat 1912.219 kb on - strand, within fbpat 1912.322 kb on + strand, within fbpat 1912.363 kb on - strandat 1912.383 kb on - strandat 1912.477 kb on - strandat 1912.503 kb on - strandat 1912.582 kb on + strandat 1912.648 kb on + strand, within DVU1842at 1912.757 kb on - strand, within DVU1842at 1913.542 kb on + strandat 1913.738 kb on + strand, within DVU1843at 1913.783 kb on - strand, within DVU1843at 1913.823 kb on + strand, within DVU1843at 1913.837 kb on - strand, within DVU1843at 1914.110 kb on - strand, within DVU1843at 1914.202 kb on + strand, within DVU1843at 1914.270 kb on + strand, within DVU1843

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,911,766 + fbp DVU1841 0.32 +0.5
1,911,774 - fbp DVU1841 0.33 +0.2
1,912,219 - fbp DVU1841 0.77 +2.5
1,912,322 + fbp DVU1841 0.87 +0.2
1,912,363 - +1.5
1,912,383 - +2.5
1,912,477 - -1.9
1,912,503 - +0.0
1,912,582 + +0.0
1,912,648 + DVU1842 0.11 -1.4
1,912,757 - DVU1842 0.22 +1.0
1,913,542 + -0.3
1,913,738 + DVU1843 0.20 -0.4
1,913,783 - DVU1843 0.25 +1.0
1,913,823 + DVU1843 0.29 +0.1
1,913,837 - DVU1843 0.31 +1.7
1,914,110 - DVU1843 0.59 +0.8
1,914,202 + DVU1843 0.69 -1.1
1,914,270 + DVU1843 0.76 +0.4

Or see this region's nucleotide sequence