Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1656

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaspC4 and folK are separated by 74 nucleotidesfolK and DVU1657 are separated by 24 nucleotidesDVU1657 and DVU1658 are separated by 257 nucleotides DVU1655: aspC4 - aminotransferase, classes I and II (TIGR), at 1,736,595 to 1,737,761 aspC4 DVU1656: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (TIGR), at 1,737,836 to 1,738,261 folK DVU1657: DVU1657 - hypothetical protein (TIGR), at 1,738,286 to 1,738,585 DVU1657 DVU1658: DVU1658 - transaldolase, putative (TIGR), at 1,738,843 to 1,739,490 DVU1658 Position (kb) 1737 1738 1739Strain fitness (log2 ratio) -1 0 1 2at 1738.685 kb on + strandat 1738.751 kb on + strandat 1738.807 kb on - strandat 1739.014 kb on - strand, within DVU1658at 1739.143 kb on + strand, within DVU1658at 1739.261 kb on + strand, within DVU1658

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,738,685 + +2.5
1,738,751 + -0.3
1,738,807 - -0.4
1,739,014 - DVU1658 0.26 -0.2
1,739,143 + DVU1658 0.46 +0.4
1,739,261 + DVU1658 0.65 -0.4

Or see this region's nucleotide sequence