Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1279

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsH and folP overlap by 4 nucleotidesfolP and DVU1280 are separated by 8 nucleotidesDVU1280 and DVU1281 are separated by 1 nucleotides DVU1278: ftsH - cell division protein FtsH (TIGR), at 1,369,986 to 1,371,956 ftsH DVU1279: folP - dihydropteroate synthase (TIGR), at 1,371,953 to 1,372,813 folP DVU1280: DVU1280 - conserved hypothetical protein TIGR00159 (TIGR), at 1,372,822 to 1,373,568 DVU1280 DVU1281: DVU1281 - conserved hypothetical protein (TIGR), at 1,373,570 to 1,374,472 DVU1281 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -1 0 1 2at 1371.911 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.999 kb on + strand, within DVU1280at 1373.169 kb on - strand, within DVU1280at 1373.348 kb on - strand, within DVU1280at 1373.419 kb on + strand, within DVU1280at 1373.524 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,371,911 - -1.3
1,372,780 - -0.3
1,372,780 - -0.3
1,372,780 - -0.7
1,372,780 - -0.2
1,372,999 + DVU1280 0.24 +0.3
1,373,169 - DVU1280 0.46 +2.5
1,373,348 - DVU1280 0.70 +1.1
1,373,419 + DVU1280 0.80 +0.3
1,373,524 - +1.4

Or see this region's nucleotide sequence