Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1162

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1160 and DVU1161 are separated by 36 nucleotidesDVU1161 and DVU1162 overlap by 14 nucleotidesDVU1162 and DVU1163 are separated by 142 nucleotides DVU1160: DVU1160 - urea transporter, putative (TIGR), at 1,253,139 to 1,254,152 DVU1160 DVU1161: DVU1161 - hypothetical protein (TIGR), at 1,254,189 to 1,254,419 DVU1161 DVU1162: DVU1162 - hypothetical protein (TIGR), at 1,254,406 to 1,254,597 DVU1162 DVU1163: DVU1163 - major facilitator superfamily protein (TIGR), at 1,254,740 to 1,256,014 DVU1163 Position (kb) 1254 1255Strain fitness (log2 ratio) -2 -1 0 1at 1253.409 kb on + strand, within DVU1160at 1253.433 kb on - strand, within DVU1160at 1253.479 kb on + strand, within DVU1160at 1253.479 kb on + strand, within DVU1160at 1253.492 kb on + strand, within DVU1160at 1253.516 kb on + strand, within DVU1160at 1253.516 kb on + strand, within DVU1160at 1253.580 kb on - strand, within DVU1160at 1253.602 kb on + strand, within DVU1160at 1253.610 kb on - strand, within DVU1160at 1253.633 kb on + strand, within DVU1160at 1253.665 kb on + strand, within DVU1160at 1253.683 kb on - strand, within DVU1160at 1253.833 kb on + strand, within DVU1160at 1253.843 kb on + strand, within DVU1160at 1253.968 kb on - strand, within DVU1160at 1253.986 kb on + strand, within DVU1160at 1253.988 kb on + strand, within DVU1160at 1253.994 kb on - strand, within DVU1160at 1254.029 kb on - strand, within DVU1160at 1254.158 kb on - strandat 1254.163 kb on + strandat 1254.435 kb on + strand, within DVU1162at 1254.697 kb on + strandat 1254.702 kb on + strandat 1254.799 kb on + strandat 1254.799 kb on + strandat 1254.804 kb on + strandat 1254.807 kb on - strandat 1254.807 kb on - strandat 1254.811 kb on + strandat 1254.862 kb on - strandat 1254.868 kb on + strand, within DVU1163at 1254.921 kb on - strand, within DVU1163at 1254.940 kb on - strand, within DVU1163at 1255.009 kb on - strand, within DVU1163at 1255.011 kb on + strand, within DVU1163at 1255.019 kb on - strand, within DVU1163at 1255.019 kb on - strand, within DVU1163at 1255.058 kb on + strand, within DVU1163at 1255.079 kb on - strand, within DVU1163at 1255.119 kb on - strand, within DVU1163at 1255.359 kb on + strand, within DVU1163at 1255.428 kb on + strand, within DVU1163

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,253,409 + DVU1160 0.27 +1.5
1,253,433 - DVU1160 0.29 -0.5
1,253,479 + DVU1160 0.34 -0.8
1,253,479 + DVU1160 0.34 -0.1
1,253,492 + DVU1160 0.35 +0.0
1,253,516 + DVU1160 0.37 -0.8
1,253,516 + DVU1160 0.37 +0.3
1,253,580 - DVU1160 0.43 -0.8
1,253,602 + DVU1160 0.46 -0.3
1,253,610 - DVU1160 0.46 +0.1
1,253,633 + DVU1160 0.49 -0.9
1,253,665 + DVU1160 0.52 -1.6
1,253,683 - DVU1160 0.54 -0.4
1,253,833 + DVU1160 0.68 -0.8
1,253,843 + DVU1160 0.69 -1.8
1,253,968 - DVU1160 0.82 +1.3
1,253,986 + DVU1160 0.84 -0.5
1,253,988 + DVU1160 0.84 +0.1
1,253,994 - DVU1160 0.84 -0.1
1,254,029 - DVU1160 0.88 -0.1
1,254,158 - -0.0
1,254,163 + +0.2
1,254,435 + DVU1162 0.15 +0.2
1,254,697 + -1.0
1,254,702 + -0.8
1,254,799 + -1.4
1,254,799 + +0.1
1,254,804 + -1.1
1,254,807 - +0.1
1,254,807 - -0.6
1,254,811 + -0.2
1,254,862 - -0.1
1,254,868 + DVU1163 0.10 -0.1
1,254,921 - DVU1163 0.14 -0.3
1,254,940 - DVU1163 0.16 -0.5
1,255,009 - DVU1163 0.21 +0.1
1,255,011 + DVU1163 0.21 +0.9
1,255,019 - DVU1163 0.22 -0.7
1,255,019 - DVU1163 0.22 -0.1
1,255,058 + DVU1163 0.25 +0.6
1,255,079 - DVU1163 0.27 -0.6
1,255,119 - DVU1163 0.30 -1.2
1,255,359 + DVU1163 0.49 -0.4
1,255,428 + DVU1163 0.54 +0.5

Or see this region's nucleotide sequence