Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1160 and DVU1161 are separated by 36 nucleotides DVU1161 and DVU1162 overlap by 14 nucleotides DVU1162 and DVU1163 are separated by 142 nucleotides
DVU1160: DVU1160 - urea transporter, putative (TIGR), at 1,253,139 to 1,254,152
DVU1160
DVU1161: DVU1161 - hypothetical protein (TIGR), at 1,254,189 to 1,254,419
DVU1161
DVU1162: DVU1162 - hypothetical protein (TIGR), at 1,254,406 to 1,254,597
DVU1162
DVU1163: DVU1163 - major facilitator superfamily protein (TIGR), at 1,254,740 to 1,256,014
DVU1163
Position (kb)
1254
1255 Strain fitness (log2 ratio)
-2
-1
0
1 at 1253.409 kb on + strand, within DVU1160 at 1253.433 kb on - strand, within DVU1160 at 1253.479 kb on + strand, within DVU1160 at 1253.479 kb on + strand, within DVU1160 at 1253.492 kb on + strand, within DVU1160 at 1253.516 kb on + strand, within DVU1160 at 1253.516 kb on + strand, within DVU1160 at 1253.580 kb on - strand, within DVU1160 at 1253.602 kb on + strand, within DVU1160 at 1253.610 kb on - strand, within DVU1160 at 1253.633 kb on + strand, within DVU1160 at 1253.665 kb on + strand, within DVU1160 at 1253.683 kb on - strand, within DVU1160 at 1253.833 kb on + strand, within DVU1160 at 1253.843 kb on + strand, within DVU1160 at 1253.968 kb on - strand, within DVU1160 at 1253.986 kb on + strand, within DVU1160 at 1253.988 kb on + strand, within DVU1160 at 1253.994 kb on - strand, within DVU1160 at 1254.029 kb on - strand, within DVU1160 at 1254.158 kb on - strand at 1254.163 kb on + strand at 1254.435 kb on + strand, within DVU1162 at 1254.697 kb on + strand at 1254.702 kb on + strand at 1254.799 kb on + strand at 1254.799 kb on + strand at 1254.804 kb on + strand at 1254.807 kb on - strand at 1254.807 kb on - strand at 1254.811 kb on + strand at 1254.862 kb on - strand at 1254.868 kb on + strand, within DVU1163 at 1254.921 kb on - strand, within DVU1163 at 1254.940 kb on - strand, within DVU1163 at 1255.009 kb on - strand, within DVU1163 at 1255.011 kb on + strand, within DVU1163 at 1255.019 kb on - strand, within DVU1163 at 1255.019 kb on - strand, within DVU1163 at 1255.058 kb on + strand, within DVU1163 at 1255.079 kb on - strand, within DVU1163 at 1255.119 kb on - strand, within DVU1163 at 1255.359 kb on + strand, within DVU1163 at 1255.428 kb on + strand, within DVU1163
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 1,253,409 + DVU1160 0.27 +1.5 1,253,433 - DVU1160 0.29 -0.5 1,253,479 + DVU1160 0.34 -0.8 1,253,479 + DVU1160 0.34 -0.1 1,253,492 + DVU1160 0.35 +0.0 1,253,516 + DVU1160 0.37 -0.8 1,253,516 + DVU1160 0.37 +0.3 1,253,580 - DVU1160 0.43 -0.8 1,253,602 + DVU1160 0.46 -0.3 1,253,610 - DVU1160 0.46 +0.1 1,253,633 + DVU1160 0.49 -0.9 1,253,665 + DVU1160 0.52 -1.6 1,253,683 - DVU1160 0.54 -0.4 1,253,833 + DVU1160 0.68 -0.8 1,253,843 + DVU1160 0.69 -1.8 1,253,968 - DVU1160 0.82 +1.3 1,253,986 + DVU1160 0.84 -0.5 1,253,988 + DVU1160 0.84 +0.1 1,253,994 - DVU1160 0.84 -0.1 1,254,029 - DVU1160 0.88 -0.1 1,254,158 - -0.0 1,254,163 + +0.2 1,254,435 + DVU1162 0.15 +0.2 1,254,697 + -1.0 1,254,702 + -0.8 1,254,799 + -1.4 1,254,799 + +0.1 1,254,804 + -1.1 1,254,807 - +0.1 1,254,807 - -0.6 1,254,811 + -0.2 1,254,862 - -0.1 1,254,868 + DVU1163 0.10 -0.1 1,254,921 - DVU1163 0.14 -0.3 1,254,940 - DVU1163 0.16 -0.5 1,255,009 - DVU1163 0.21 +0.1 1,255,011 + DVU1163 0.21 +0.9 1,255,019 - DVU1163 0.22 -0.7 1,255,019 - DVU1163 0.22 -0.1 1,255,058 + DVU1163 0.25 +0.6 1,255,079 - DVU1163 0.27 -0.6 1,255,119 - DVU1163 0.30 -1.2 1,255,359 + DVU1163 0.49 -0.4 1,255,428 + DVU1163 0.54 +0.5
Or see this region's nucleotide sequence